Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq719 244 1e-59
seq161 111 2e-19
>seq719
Length=48969
Score = 244 bits (270), Expect = 1e-59
Identities = 526/774 (68%), Gaps = 18/774 (2%)
Strand=Plus/Minus
Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233
|||| |||||| | | ||||||| || || | || ||| ||||| || | |
Sbjct 17509 GAGAGACCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAG 17450
Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293
|||||| ||||| ||| || | ||| | |||| ||| || |||||| | || ||
Sbjct 17449 CGTGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACA 17390
Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353
|| |||||||||||||| ||| ||| |||| |||||||| || | ||||||
Sbjct 17389 CTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAG 17330
Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413
|| ||||| || || || || ||||| || |||||| || ||| ||||||||| |
Sbjct 17329 GAAGACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATG 17270
Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGG 53471
| ||||| || ||| || || |||| | ||| |||||| | ||| | || |
Sbjct 17269 GCTGGTGGCATTGGTCTCAAC-GCTC-ACCGTATCCGTGCTACTGGCTCCTACATTGCCG 17212
Query 53472 GGACGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529
| || ||||| | ||| | || || | || ||||| || |||||||||||||| ||
Sbjct 17211 GCACCAACGGTACATCGA--ACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGC 17154
Query 53530 CCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCC 53589
|| |||||| |||||||||| ||||| || | |||||||| ||||| |||||
Sbjct 17153 TCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCC 17094
Query 53590 GTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT 53649
||||||||||| | | ||||| | || |||| ||| || || | || ||| |
Sbjct 17093 CTGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGT 17034
Query 53650 GCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708
|| ||| || || || || ||||| ||||| || || || |||||| | | || |
Sbjct 17033 CCG-TGCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCG 16975
Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTC 53767
||||| ||| || ||| ||| |||||||| || |||||||| ||| | | | || |
Sbjct 16974 AGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTG-C 16916
Query 53768 TACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGC---CGCTACAAG 53824
||||| || ||||| | | |||| || ||||| | ||||| | ||||
Sbjct 16915 TACGGCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAG 16856
Query 53825 AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGA 53884
| | ||||||| | || | ||| |||| ||||| || ||| ||||| ||
Sbjct 16855 ACTA---TCAAGGCCCAGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGC 16799
Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
| || | |||| |||||||||| | | |||| ||||||||||||||||||
Sbjct 16798 AACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAAC 16745
Score = 105 bits (116), Expect = 7e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||| || |||||||| | |||||||||||||||||| || |||||| |||| || | ||
Sbjct 15914 TGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCC 15855
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
|| ||| |||| | | | |||||||| ||| |||||| || |||||||||||
Sbjct 15854 GACAATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACGGG 15795
Query 55906 TATGTACTATCTGCGGAC 55923
|||||||| ||||| ||
Sbjct 15794 CATGTACTACCTGCGTAC 15777
Score = 86.0 bits (94), Expect = 7e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553
||||||| || || ||||| || || || || | |||||| |||||||||||||| |
Sbjct 16209 TGCTCGTTGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCT 16150
Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605
||||||| ||||| |||||||||||| ||| || || || || |||||
Sbjct 16149 TCGAGCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGAGTT 16098
>seq161
Length=12087
Score = 111 bits (122), Expect = 2e-19
Identities = 212/308 (69%), Gaps = 6/308 (2%)
Strand=Plus/Plus
Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350
|||||| || | ||| ||||||||||| ||| |||||||| ||||| ||||| |
Sbjct 6486 ACGGTGACAGTCTCGTGTGAATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTC 6545
Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410
| | |||||| | || ||||||||| ||| | |||||||| ||||||||| | |
Sbjct 6546 GAGAACCGAAGTTACCGGAGGGCTCCAAGCAGTTGATGTTGTTGGAACCCACAAAGGTCT 6605
Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470
| || | || || || ||| ||| | | || || ||||| || | ||||||||
Sbjct 6606 GCGCGAGACCGATGATGGTCTGTTGAAGGGACACTTCGCCGTGGTGGTAAGACGTCTGCT 6665
Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAG 117528
| | | || || |||| | | | |||||| || | |||| || ||| ||||||
Sbjct 6666 CAGAAATATAACCGGCCAATTCAACGACCTTCTGATCTTTGAC--CAAGTTTCTCTTGAA 6723
Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCG 117587
|| || || || || || || |||| ||||||| |||||| || ||||| || |
Sbjct 6724 ACAAGCGTACATGACTTTACGTTGACCGGGCTTCAATCCATCCAGAAC-AGAGGGAATGG 6782
Query 117588 AACGCTTG 117595
||||| ||
Sbjct 6783 AACGCATG 6790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547198119717200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |