Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq719 244 1e-59 seq161 111 2e-19 >seq719 Length=48969 Score = 244 bits (270), Expect = 1e-59 Identities = 526/774 (68%), Gaps = 18/774 (2%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| |||||| | | ||||||| || || | || ||| ||||| || | | Sbjct 17509 GAGAGACCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAG 17450 Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293 |||||| ||||| ||| || | ||| | |||| ||| || |||||| | || || Sbjct 17449 CGTGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACA 17390 Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 || |||||||||||||| ||| ||| |||| |||||||| || | |||||| Sbjct 17389 CTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAG 17330 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || ||||| || || || || ||||| || |||||| || ||| ||||||||| | Sbjct 17329 GAAGACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATG 17270 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGG 53471 | ||||| || ||| || || |||| | ||| |||||| | ||| | || | Sbjct 17269 GCTGGTGGCATTGGTCTCAAC-GCTC-ACCGTATCCGTGCTACTGGCTCCTACATTGCCG 17212 Query 53472 GGACGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529 | || ||||| | ||| | || || | || ||||| || |||||||||||||| || Sbjct 17211 GCACCAACGGTACATCGA--ACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGC 17154 Query 53530 CCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCC 53589 || |||||| |||||||||| ||||| || | |||||||| ||||| ||||| Sbjct 17153 TCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCC 17094 Query 53590 GTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT 53649 ||||||||||| | | ||||| | || |||| ||| || || | || ||| | Sbjct 17093 CTGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGT 17034 Query 53650 GCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 || ||| || || || || ||||| ||||| || || || |||||| | | || | Sbjct 17033 CCG-TGCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCG 16975 Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTC 53767 ||||| ||| || ||| ||| |||||||| || |||||||| ||| | | | || | Sbjct 16974 AGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTG-C 16916 Query 53768 TACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGC---CGCTACAAG 53824 ||||| || ||||| | | |||| || ||||| | ||||| | |||| Sbjct 16915 TACGGCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAG 16856 Query 53825 AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGA 53884 | | ||||||| | || | ||| |||| ||||| || ||| ||||| || Sbjct 16855 ACTA---TCAAGGCCCAGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGC 16799 Query 53885 ACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | || | |||| |||||||||| | | |||| |||||||||||||||||| Sbjct 16798 AACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAAC 16745 Score = 105 bits (116), Expect = 7e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||| || |||||||| | |||||||||||||||||| || |||||| |||| || | || Sbjct 15914 TGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCC 15855 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || ||| |||| | | | |||||||| ||| |||||| || ||||||||||| Sbjct 15854 GACAATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACGGG 15795 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| ||||| || Sbjct 15794 CATGTACTACCTGCGTAC 15777 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553 ||||||| || || ||||| || || || || | |||||| |||||||||||||| | Sbjct 16209 TGCTCGTTGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCT 16150 Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 ||||||| ||||| |||||||||||| ||| || || || || ||||| Sbjct 16149 TCGAGCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGAGTT 16098 >seq161 Length=12087 Score = 111 bits (122), Expect = 2e-19 Identities = 212/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||||| || | ||| ||||||||||| ||| |||||||| ||||| ||||| | Sbjct 6486 ACGGTGACAGTCTCGTGTGAATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTC 6545 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 | | |||||| | || ||||||||| ||| | |||||||| ||||||||| | | Sbjct 6546 GAGAACCGAAGTTACCGGAGGGCTCCAAGCAGTTGATGTTGTTGGAACCCACAAAGGTCT 6605 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 | || | || || || ||| ||| | | || || ||||| || | |||||||| Sbjct 6606 GCGCGAGACCGATGATGGTCTGTTGAAGGGACACTTCGCCGTGGTGGTAAGACGTCTGCT 6665 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAG 117528 | | | || || |||| | | | |||||| || | |||| || ||| |||||| Sbjct 6666 CAGAAATATAACCGGCCAATTCAACGACCTTCTGATCTTTGAC--CAAGTTTCTCTTGAA 6723 Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCG 117587 || || || || || || || |||| ||||||| |||||| || ||||| || | Sbjct 6724 ACAAGCGTACATGACTTTACGTTGACCGGGCTTCAATCCATCCAGAAC-AGAGGGAATGG 6782 Query 117588 AACGCTTG 117595 ||||| || Sbjct 6783 AACGCATG 6790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198119717200