Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq719 325 4e-84 seq1474 181 1e-40 seq1284 167 3e-36 >seq719 Length=48969 Score = 325 bits (360), Expect = 4e-84 Identities = 1147/1768 (65%), Gaps = 69/1768 (4%) Strand=Plus/Plus Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090 |||| |||| ||||| |||||||||||||||||||| || |||||||||| | ||| Sbjct 15770 TGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTG 15829 Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150 ||| ||| ||| | | ||| |||| || |||| |||||| || ||||| ||||| Sbjct 15830 CATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTG 15889 Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210 |||||| || ||||| || || ||||| | | || | || | || ||||| Sbjct 15890 GTCGATGAAGGCACCACGGTCGGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCA 15949 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 ||| || |||| |||| | ||| | ||||||| | | | | | | Sbjct 15950 TACAGTCTTGTACAAAGCCTTG---ACCTCAGCGGGAATGTTGGGGATGTTCTGAATAGA 16006 Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| || | || | || |||| || | ||| | || | | | || Sbjct 16007 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAG 16066 Query 80325 ATCTTTCA-CAAG--GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| |||| ||| | | ||| || | || |||| || || || |||||| | Sbjct 16067 ATCCTTCAGCAACCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGAACACGACGCTG 16123 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || ||||||||| || | |||||| | ||| Sbjct 16124 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 16183 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| ||| | || | || || |||| ||||||| |||||| | ||| Sbjct 16184 GGCAGTAGGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTC 16243 Query 80502 GCGCA---AATCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || |||| | ||||| |||| | ||| |||| ||||||||||| | Sbjct 16244 CTTCAGAGAATCCCAGTCCCAAAGATCAG----AGGGCT-TGACATTCCACATGTCGTAC 16298 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| |||| || || || ||| || |||| ||| | ||||||| |||| Sbjct 16299 TGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTG 16358 Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 ||||||| | ||| | || || ||||| || ||| |||||||| |||||| Sbjct 16359 GCCAGCTGAACGGACATGGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTG 16418 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | | | || |||| || ||||| | || || | | ||| | ||||| || Sbjct 16419 AGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGA 16478 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAAT 80792 ||||| || || | | || |||||||| ||| |||| | || || | |||| |||| Sbjct 16479 CCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTTGCTATTGCGAG-CCTCGGGAAC 16537 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| ||| ||| |||| ||||| |||||| ||| ||| | || || || Sbjct 16538 GGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTC 16597 Query 80853 ATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906 ||||| ||||| ||||| | | ||| | || || | || ||| || Sbjct 16598 GTGAAGCTTCTGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGGGCAAG 16657 Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| |||| ||||| || || ||||| || | | | |||| | ||| || ||||| Sbjct 16658 GGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 16717 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | || || || || |||||||| |||||||| |||| |||| || || Sbjct 16718 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 16777 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 ||||||| |||| | ||| | || |||||| ||| | || |||||||| | ||||| Sbjct 16778 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAG 16837 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146 || | ||||||| |||||| ||||| ||| | ||||| |||| | Sbjct 16838 CTTCTGGGCCTTGATAGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGC 16897 Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 ||||||| | |||| | ||| ||| | | | |||||||| || |||||||| ||| Sbjct 16898 CTCGAACTCTTCGCCGTAGCAGT-CAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGG 16956 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 |||||||| || ||||| || ||||||||| || ||||||||||| ||| || Sbjct 16957 TCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGA 17016 Query 81266 ACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 | || ||||| ||| || ||||||| | || ||||| |||||| || | || || Sbjct 17017 AAAGATCGCGAGCA-CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCG 17075 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGG 81378 | || || || ||||| ||||| || || | ||||| | || | |||| | Sbjct 17076 AAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTG---TTG 17132 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 |||||||||| |||||| || ||||| ||| || ||||| | ||| || |||| ||| Sbjct 17133 CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCG 17192 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTG 81496 | || |||||| || || | || || || | || || || || ||| Sbjct 17193 TTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTG 17252 Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 ||||| |||||||| | | ||| || ||| || || || | ||| || |||| Sbjct 17253 --AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAA 17310 Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTG 81608 | ||||| || |||| |||||||| ||||| ||| ||||| || || ||| Sbjct 17311 TACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-CTG 17368 Query 81609 AGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA 81668 |||| | || || ||||| ||||| |||| ||||| |||| | | | || Sbjct 17369 AGGG------GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 17422 Query 81669 CATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728 ||| |||| ||||| || |||| || | | ||||| || |||| || || Sbjct 17423 CATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAAC 17482 Query 81729 ACGCATAAACATGTACTGGGGCGTCTCG 81756 |||||| | ||||| ||| || ||||| Sbjct 17483 ACGCATGATCATGTGCTGAGGTCTCTCG 17510 >seq1474 Length=13610 Score = 181 bits (200), Expect = 1e-40 Identities = 181/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||| | || |||||||| ||||| | || || |||||| | Sbjct 6439 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACGATTACGTTGGAAGTCGAGTCATCT 6380 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| | || |||||||| |||||||| |||||||| |||||| Sbjct 6379 GACACGATTGATAACGTGAAGTCCAAGATTCAGGATAAGGAGGGTATTCCTCCCGACCAG 6320 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| | || || | ||||||||| ||| |||||||| Sbjct 6319 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGACGGTCGTACCCTGAGC-GACTATAA 6261 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || || || ||||| ||| | |||||||| || || ||| Sbjct 6260 CATCCAGAAGGAGTCAACCCTGCATCTCGTCCTCCGTCTTCGTGGCGGCCAA 6209 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||||||||| || |||||||| || ||||| ||||| ||||| ||||| || | Sbjct 6883 GTCAAGACGCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCTTCTGATACTATCGAC 6824 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || |||||||| |||||||| ||||| || |||||||||||| | || Sbjct 6823 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATC 6764 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| ||||| | || ||||| | ||||| || | || ||||| Sbjct 6763 TTTGCTGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAG 6704 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||| | |||||||||||||| Sbjct 6703 TCTACCCTCCACTTGGTCCTTCGTCTTCGCGGTGG 6669 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || ||||| |||||||| ||||| || |||||||| || Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || || ||||||||||| |||||||| |||||| Sbjct 6607 GACACCATTGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAG 6548 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| || ||||||| ||| || | | ||||| || Sbjct 6547 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAAC 6488 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || ||||| ||| ||||||| || ||||| Sbjct 6487 ATTCAGAAGGAGTCAACCCTGCATCTCGTCCTGCGTCTGCGTGGTGG 6441 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| |||| ||| | || | ||| | Sbjct 7157 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACGTCAAGTCC 7098 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || |||||||||||||| ||||| ||||| ||| Sbjct 7097 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGCAAG 7038 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| | || || || |||| ||||| || || ||||| Sbjct 7037 CAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCTACCCTTCAC 6978 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || ||||| ||||| Sbjct 6977 TTGGTTCTCCGCCTTCGTGGTGG 6955 >seq1284 Length=15898 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || |||||||| ||||| Sbjct 6047 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 6106 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 6107 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 6166 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 6167 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 6226 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || ||| |||| || || ||||| Sbjct 6227 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 6276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570291765107680