Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq719 325 4e-84
seq1474 181 1e-40
seq1284 167 3e-36
>seq719
Length=48969
Score = 325 bits (360), Expect = 4e-84
Identities = 1147/1768 (65%), Gaps = 69/1768 (4%)
Strand=Plus/Plus
Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090
|||| |||| ||||| |||||||||||||||||||| || |||||||||| | |||
Sbjct 15770 TGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTG 15829
Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150
||| ||| ||| | | ||| |||| || |||| |||||| || ||||| |||||
Sbjct 15830 CATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTG 15889
Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210
|||||| || ||||| || || ||||| | | || | || | || |||||
Sbjct 15890 GTCGATGAAGGCACCACGGTCGGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCA 15949
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
||| || |||| |||| | ||| | ||||||| | | | | | |
Sbjct 15950 TACAGTCTTGTACAAAGCCTTG---ACCTCAGCGGGAATGTTGGGGATGTTCTGAATAGA 16006
Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||||| || | || | || |||| || | ||| | || | | | ||
Sbjct 16007 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAG 16066
Query 80325 ATCTTTCA-CAAG--GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
||| |||| ||| | | ||| || | || |||| || || || |||||| |
Sbjct 16067 ATCCTTCAGCAACCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGAACACGACGCTG 16123
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| ||||| || ||||||||| || | |||||| | |||
Sbjct 16124 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 16183
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| ||| | || | || || |||| ||||||| |||||| | |||
Sbjct 16184 GGCAGTAGGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTC 16243
Query 80502 GCGCA---AATCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553
|| |||| | ||||| |||| | ||| |||| ||||||||||| |
Sbjct 16244 CTTCAGAGAATCCCAGTCCCAAAGATCAG----AGGGCT-TGACATTCCACATGTCGTAC 16298
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||| |||| || || || ||| || |||| ||| | ||||||| ||||
Sbjct 16299 TGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTG 16358
Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673
||||||| | ||| | || || ||||| || ||| |||||||| ||||||
Sbjct 16359 GCCAGCTGAACGGACATGGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTG 16418
Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733
| | | || |||| || ||||| | || || | | ||| | ||||| ||
Sbjct 16419 AGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGA 16478
Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAAT 80792
||||| || || | | || |||||||| ||| |||| | || || | |||| ||||
Sbjct 16479 CCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTTGCTATTGCGAG-CCTCGGGAAC 16537
Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852
||||| ||| ||| |||| ||||| |||||| ||| ||| | || || ||
Sbjct 16538 GGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTC 16597
Query 80853 ATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906
||||| ||||| ||||| | | ||| | || || | || ||| ||
Sbjct 16598 GTGAAGCTTCTGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGGGCAAG 16657
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
||| |||| ||||| || || ||||| || | | | |||| | ||| || |||||
Sbjct 16658 GGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCA 16717
Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026
| || || || || |||||||| |||||||| |||| |||| || ||
Sbjct 16718 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 16777
Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086
||||||| |||| | ||| | || |||||| ||| | || |||||||| | |||||
Sbjct 16778 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAG 16837
Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146
|| | ||||||| |||||| ||||| ||| | ||||| |||| |
Sbjct 16838 CTTCTGGGCCTTGATAGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGC 16897
Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205
||||||| | |||| | ||| ||| | | | |||||||| || |||||||| |||
Sbjct 16898 CTCGAACTCTTCGCCGTAGCAGT-CAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGG 16956
Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265
|||||||| || ||||| || ||||||||| || ||||||||||| ||| ||
Sbjct 16957 TCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGA 17016
Query 81266 ACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324
| || ||||| ||| || ||||||| | || ||||| |||||| || | || ||
Sbjct 17017 AAAGATCGCGAGCA-CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCG 17075
Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGG 81378
| || || || ||||| ||||| || || | ||||| | || | |||| |
Sbjct 17076 AAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTG---TTG 17132
Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438
|||||||||| |||||| || ||||| ||| || ||||| | ||| || |||| |||
Sbjct 17133 CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCG 17192
Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTG 81496
| || |||||| || || | || || || | || || || || |||
Sbjct 17193 TTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTG 17252
Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556
||||| |||||||| | | ||| || ||| || || || | ||| || ||||
Sbjct 17253 --AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAA 17310
Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTG 81608
| ||||| || |||| |||||||| ||||| ||| ||||| || || |||
Sbjct 17311 TACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-CTG 17368
Query 81609 AGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA 81668
|||| | || || ||||| ||||| |||| ||||| |||| | | | ||
Sbjct 17369 AGGG------GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 17422
Query 81669 CATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728
||| |||| ||||| || |||| || | | ||||| || |||| || ||
Sbjct 17423 CATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAAC 17482
Query 81729 ACGCATAAACATGTACTGGGGCGTCTCG 81756
|||||| | ||||| ||| || |||||
Sbjct 17483 ACGCATGATCATGTGCTGAGGTCTCTCG 17510
>seq1474
Length=13610
Score = 181 bits (200), Expect = 1e-40
Identities = 181/232 (78%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||| | || |||||||| ||||| | || || |||||| |
Sbjct 6439 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACGATTACGTTGGAAGTCGAGTCATCT 6380
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || ||||| | || |||||||| |||||||| |||||||| ||||||
Sbjct 6379 GACACGATTGATAACGTGAAGTCCAAGATTCAGGATAAGGAGGGTATTCCTCCCGACCAG 6320
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||| ||||| | || || | ||||||||| ||| ||||||||
Sbjct 6319 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGACGGTCGTACCCTGAGC-GACTATAA 6261
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
|||| ||||| || || || ||||| ||| | |||||||| || || |||
Sbjct 6260 CATCCAGAAGGAGTCAACCCTGCATCTCGTCCTCCGTCTTCGTGGCGGCCAA 6209
Score = 167 bits (184), Expect = 3e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
||||||||||| || |||||||| || ||||| ||||| ||||| ||||| || |
Sbjct 6883 GTCAAGACGCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCTTCTGATACTATCGAC 6824
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || |||||||| |||||||| ||||| || |||||||||||| | ||
Sbjct 6823 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATC 6764
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| |||||||| ||||| | || ||||| | ||||| || | || |||||
Sbjct 6763 TTTGCTGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAG 6704
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || | ||| | ||||||||||||||
Sbjct 6703 TCTACCCTCCACTTGGTCCTTCGTCTTCGCGGTGG 6669
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || ||||| || ||||| |||||||| ||||| || |||||||| ||
Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||| | || || || ||||||||||| |||||||| ||||||
Sbjct 6607 GACACCATTGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAG 6548
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || ||||| || ||||||| ||| || | | ||||| ||
Sbjct 6547 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAAC 6488
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || || ||||| ||| ||||||| || |||||
Sbjct 6487 ATTCAGAAGGAGTCAACCCTGCATCTCGTCCTGCGTCTGCGTGGTGG 6441
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| |||| ||| | || | ||| |
Sbjct 7157 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACGTCAAGTCC 7098
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| ||||| || |||||||||||||| ||||| ||||| |||
Sbjct 7097 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGCAAG 7038
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||| | || ||||| | || || || |||| ||||| || || |||||
Sbjct 7037 CAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCTACCCTTCAC 6978
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | || ||||| |||||
Sbjct 6977 TTGGTTCTCCGCCTTCGTGGTGG 6955
>seq1284
Length=15898
Score = 167 bits (184), Expect = 3e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || || ||||||||||| || |||||||| |||||
Sbjct 6047 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 6106
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 6107 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 6166
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| || || || || || ||||| |||||||| | || ||||| | |||||
Sbjct 6167 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 6226
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || ||| |||| || || |||||
Sbjct 6227 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 6276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570291765107680
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