Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq1593 104 2e-17
>seq1593
Length=35623
Score = 104 bits (114), Expect = 2e-17
Identities = 422/664 (64%), Gaps = 61/664 (9%)
Strand=Plus/Plus
Query 29848 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGC 29907
||| ||||| | ||| || || ||| |||| ||||||| ||| ||||||||| ||
Sbjct 922 TCTCGGCTCGCGCTCTAGTTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGC 981
Query 29908 GTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29966
||| |||| | ||| | | || ||||||| | || || | | || |||||||
Sbjct 982 GTCGCCCATGACGTGCGTGAGGCT-TCCCGGTACCAGATCGCACGCCCGCGCAATCATGT 1040
Query 29967 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 30026
|| ||||| | ||||||||| ||||| |||||||| ||||| |||||||| | ||||
Sbjct 1041 GTGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGTACGCCGAGTCCCATGTCGCAGGACC 1100
Query 30027 TCTGGTAGAGCTGACACGAGAGCT----------------CTC--------------CGT 30056
|||||| ||||| || ||| | ||| ||
Sbjct 1101 GCTGGTACAGCTGGCAATGGAGGTGGCCCTTTGGCTTCTCCTCATTTGCGAGCGTTGCGC 1160
Query 30057 CGC----TC-----------ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAG 30098
||| || ||||||||||| | ||||| |||||||| || || |
Sbjct 1161 CGCGGGCTCGCGGGTACGAGACGTAAAACTGCGCAAACATG---TGGCACGGCGGGAGCG 1217
Query 30099 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30158
|||| || ||| || ||||| |||| | || |||||| | ||| | ||||
Sbjct 1218 CCATCTTCTTCAGGTCCGCTGGATTCCACGCGCTGAGGAGGATGCGGCGGTCGTAAGGGT 1277
Query 30159 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218
| || ||| || | | | | ||| || || || ||| |||| ||| || |
Sbjct 1278 TCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAATCCG 1337
Query 30219 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30278
| | ||| |||||| || || || || | ||| ||||| |||||||| || || |
Sbjct 1338 TCTTGGAGTCGACGTACTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGGCCGA 1397
Query 30279 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338
|||| || |||| | ||| || ||| |||| | || || | || ||||||
Sbjct 1398 GGTCGCCGACTTCGCGGTGTGAGAGGCCGACGCTGTCGAGGAACTCGCGCGATCCGTTGC 1457
Query 30339 CGTCCCAGATCTTTACCCC--CTT--CTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30394
||||||||||||| || || ||| ||||| | | | | || | || ||||| |
Sbjct 1458 CGTCCCAGATCTTGACGCCTGCTTCGCTCAGCGCGAGCGACGATGTGT-TG--CCCTC-G 1513
Query 30395 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30454
|||||||| || || || | | ||| || ||||| | ||| || |||||||||
Sbjct 1514 ACGAACCAGAGGAGTTCGGCGATGACTGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGG 1573
Query 30455 GGAA 30458
||||
Sbjct 1574 GGAA 1577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406297455712488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |