Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1593 104 2e-17 >seq1593 Length=35623 Score = 104 bits (114), Expect = 2e-17 Identities = 422/664 (64%), Gaps = 61/664 (9%) Strand=Plus/Plus Query 29848 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGC 29907 ||| ||||| | ||| || || ||| |||| ||||||| ||| ||||||||| || Sbjct 922 TCTCGGCTCGCGCTCTAGTTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGC 981 Query 29908 GTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29966 ||| |||| | ||| | | || ||||||| | || || | | || ||||||| Sbjct 982 GTCGCCCATGACGTGCGTGAGGCT-TCCCGGTACCAGATCGCACGCCCGCGCAATCATGT 1040 Query 29967 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 30026 || ||||| | ||||||||| ||||| |||||||| ||||| |||||||| | |||| Sbjct 1041 GTGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGTACGCCGAGTCCCATGTCGCAGGACC 1100 Query 30027 TCTGGTAGAGCTGACACGAGAGCT----------------CTC--------------CGT 30056 |||||| ||||| || ||| | ||| || Sbjct 1101 GCTGGTACAGCTGGCAATGGAGGTGGCCCTTTGGCTTCTCCTCATTTGCGAGCGTTGCGC 1160 Query 30057 CGC----TC-----------ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAG 30098 ||| || ||||||||||| | ||||| |||||||| || || | Sbjct 1161 CGCGGGCTCGCGGGTACGAGACGTAAAACTGCGCAAACATG---TGGCACGGCGGGAGCG 1217 Query 30099 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30158 |||| || ||| || ||||| |||| | || |||||| | ||| | |||| Sbjct 1218 CCATCTTCTTCAGGTCCGCTGGATTCCACGCGCTGAGGAGGATGCGGCGGTCGTAAGGGT 1277 Query 30159 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218 | || ||| || | | | | ||| || || || ||| |||| ||| || | Sbjct 1278 TCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAATCCG 1337 Query 30219 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30278 | | ||| |||||| || || || || | ||| ||||| |||||||| || || | Sbjct 1338 TCTTGGAGTCGACGTACTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGGCCGA 1397 Query 30279 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 |||| || |||| | ||| || ||| |||| | || || | || |||||| Sbjct 1398 GGTCGCCGACTTCGCGGTGTGAGAGGCCGACGCTGTCGAGGAACTCGCGCGATCCGTTGC 1457 Query 30339 CGTCCCAGATCTTTACCCC--CTT--CTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30394 ||||||||||||| || || ||| ||||| | | | | || | || ||||| | Sbjct 1458 CGTCCCAGATCTTGACGCCTGCTTCGCTCAGCGCGAGCGACGATGTGT-TG--CCCTC-G 1513 Query 30395 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30454 |||||||| || || || | | ||| || ||||| | ||| || ||||||||| Sbjct 1514 ACGAACCAGAGGAGTTCGGCGATGACTGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGG 1573 Query 30455 GGAA 30458 |||| Sbjct 1574 GGAA 1577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406297455712488