Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1593 102 7e-17 >seq1593 Length=35623 Score = 102 bits (112), Expect = 7e-17 Identities = 193/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||||||||| |||||||||||| || ||| || |||||||||| | | || Sbjct 1200 TGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGATTCCACGCGCTGAGGAGGA 1259 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 | | | ||| | ||||||| ||| | ||| ||| || | ||| ||||| | | Sbjct 1260 TGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGC 1319 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 |||| |||| || |||| ||| | | || ||||| || |||||||| | ||| ||| Sbjct 1320 CCTGGCCCGTGTAATCCGTCTTGGAGTCGACG-TACTCGGCGCCAAAGTGGCGCCATTGG 1378 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA-ACCCCCGCTTGTCCAG 6984 || ||||| || ||||| | |||||| | || || || || || ||| |||| || Sbjct 1379 AAGCCGTACACGGGGCCGAGGTCGCCGACTTCGCGGTGTGAGAGGCCGACGC-TGTCGAG 1437 Query 6985 AAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || || || || |||| ||||||||||||| || || Sbjct 1438 GAACTCGCGCGATCCGTTGCCGTCCCAGATCTTGACGCC 1476 Score = 102 bits (112), Expect = 7e-17 Identities = 193/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380 || || ||||||||||||| |||| || || || || || |||| ||| || || | Sbjct 1476 GGCGTCAAGATCTGGGACGGCAACGGATCGCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 1418 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 | || || | |||||| | ||||| || ||||| ||||| ||| | |||||||| || Sbjct 1417 ACACCGCGAAGTCGGCGACCTCGGCCCCGTGTACGGCTTCCAATGGCGCCACTTTGGCGC 1358 Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499 ||||| || | | ||| |||| || |||| ||||| | ||||| ||| | | Sbjct 1357 CGAGTA-CGTCGACTCCAAGACGGATTACACGGGCCAGGGCGTCGACCAACTGGCCGAGG 1299 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 | ||| ||| | ||| ||||||| | ||| | | ||| | | |||||||||| | Sbjct 1298 TCATCCACAAGCTCAAGACGAACCCTTACGACCGCCGCATCCTCCTCAGCGCGTGGAATC 1239 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 | ||| || |||||||||||| |||||||||| Sbjct 1238 CAGCGGACCTGAAGAAGATGGCGCTCCCGCCGTGCCACA 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247753026080