Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1593 102 7e-17
>seq1593
Length=35623
Score = 102 bits (112), Expect = 7e-17
Identities = 193/279 (69%), Gaps = 4/279 (1%)
Strand=Plus/Plus
Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806
|||||||||| |||||||||||| || ||| || |||||||||| | | ||
Sbjct 1200 TGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGATTCCACGCGCTGAGGAGGA 1259
Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866
| | | ||| | ||||||| ||| | ||| ||| || | ||| ||||| | |
Sbjct 1260 TGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGC 1319
Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925
|||| |||| || |||| ||| | | || ||||| || |||||||| | ||| |||
Sbjct 1320 CCTGGCCCGTGTAATCCGTCTTGGAGTCGACG-TACTCGGCGCCAAAGTGGCGCCATTGG 1378
Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA-ACCCCCGCTTGTCCAG 6984
|| ||||| || ||||| | |||||| | || || || || || ||| |||| ||
Sbjct 1379 AAGCCGTACACGGGGCCGAGGTCGCCGACTTCGCGGTGTGAGAGGCCGACGC-TGTCGAG 1437
Query 6985 AAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
|| || || || |||| ||||||||||||| || ||
Sbjct 1438 GAACTCGCGCGATCCGTTGCCGTCCCAGATCTTGACGCC 1476
Score = 102 bits (112), Expect = 7e-17
Identities = 193/279 (69%), Gaps = 4/279 (1%)
Strand=Plus/Minus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380
|| || ||||||||||||| |||| || || || || || |||| ||| || || |
Sbjct 1476 GGCGTCAAGATCTGGGACGGCAACGGATCGCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 1418
Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440
| || || | |||||| | ||||| || ||||| ||||| ||| | |||||||| ||
Sbjct 1417 ACACCGCGAAGTCGGCGACCTCGGCCCCGTGTACGGCTTCCAATGGCGCCACTTTGGCGC 1358
Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499
||||| || | | ||| |||| || |||| ||||| | ||||| ||| | |
Sbjct 1357 CGAGTA-CGTCGACTCCAAGACGGATTACACGGGCCAGGGCGTCGACCAACTGGCCGAGG 1299
Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559
| ||| ||| | ||| ||||||| | ||| | | ||| | | |||||||||| |
Sbjct 1298 TCATCCACAAGCTCAAGACGAACCCTTACGACCGCCGCATCCTCCTCAGCGCGTGGAATC 1239
Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598
| ||| || |||||||||||| ||||||||||
Sbjct 1238 CAGCGGACCTGAAGAAGATGGCGCTCCCGCCGTGCCACA 1200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448247753026080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |