Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1284 158 3e-33 seq1474 152 1e-31 >seq1284 Length=15898 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 6261 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 6202 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 6201 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 6142 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 6141 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 6082 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 6081 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050 >seq1474 Length=13610 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || || ||||| || |||| | || | ||||| Sbjct 6456 AGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCATCC 6515 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||| || ||||| ||||||| || |||||||| Sbjct 6516 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCT 6575 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| || |||||||||||| || |||||| Sbjct 6576 TGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTC 6635 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || || || | |||||| Sbjct 6636 TTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || ||||| || |||||||| ||||| | |||||| Sbjct 6960 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGT 7019 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| ||||| || || || || ||||| || |||| || Sbjct 7020 GCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACC 7079 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| |||||||| || ||| || |||||||| Sbjct 7080 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAG 7139 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 7140 GGTGATGGTCTTGCCGGTGA 7159 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || || || ||||| || ||||||||||| || ||||| Sbjct 6218 ACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGT 6277 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||| |||||| || ||||||||||| || || ||||| ||||||| || Sbjct 6278 ACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACC 6337 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| |||||||| || || |||||||| || || || | Sbjct 6338 CTCCTTATCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAA 6397 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || | ||||| || || | |||||| Sbjct 6398 CGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| | ||| || || ||||| || || ||||| || || | ||||| Sbjct 6675 CGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 6734 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || || |||||||| || ||||| | || || |||||||| |||| || Sbjct 6735 CGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCC 6794 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||| ||||| || || || ||||| || ||||| || ||||||||| Sbjct 6795 TCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGA 6854 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| || ||||| ||||| || Sbjct 6855 GTGATGGTCTTGCCAGTGAGCGTCTTGAC 6883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159113177826110