Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 98.7 7e-16
>seq1474
Length=13610
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| ||||| || || || || ||||| || ||||| ||||| || |
Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || |||| | || || ||||| || ||| | || || || ||
Sbjct 6607 GACACCATTGACAACGTTAAGTC-GAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCA 6549
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || || ||||| || || || || || | |||||||| || |||||
Sbjct 6548 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAA 6489
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 6488 CATTCAGAAGGAGTCAAC 6471
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680
|||| || || ||||| || || || ||||||||||| || || || | || ||| | |
Sbjct 6885 TCGTCAAGACGCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCTTCTGATACTATCG 6826
Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739
| ||| | || | || ||| || || || || | || || || || ||||||||
Sbjct 6825 ACAATGTCAAGTC-GAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTG 6767
Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799
|| ||||| ||||| ||||| || |||| ||||| | ||| |||||||| || ||
Sbjct 6766 ATCTTTGCTGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAG 6707
Query 23800 GAGTCCAC 23807
||||| ||
Sbjct 6706 GAGTCTAC 6699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337998831647912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |