Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1474 98.7 7e-16 >seq1474 Length=13610 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || || || ||||| || ||||| ||||| || | Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || || ||||| || ||| | || || || || Sbjct 6607 GACACCATTGACAACGTTAAGTC-GAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCA 6549 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||| || || || || || | |||||||| || ||||| Sbjct 6548 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAA 6489 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 6488 CATTCAGAAGGAGTCAAC 6471 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 |||| || || ||||| || || || ||||||||||| || || || | || ||| | | Sbjct 6885 TCGTCAAGACGCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCTTCTGATACTATCG 6826 Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 | ||| | || | || ||| || || || || | || || || || |||||||| Sbjct 6825 ACAATGTCAAGTC-GAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTG 6767 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 || ||||| ||||| ||||| || |||| ||||| | ||| |||||||| || || Sbjct 6766 ATCTTTGCTGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAG 6707 Query 23800 GAGTCCAC 23807 ||||| || Sbjct 6706 GAGTCTAC 6699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998831647912