Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 152 1e-31
seq1284 152 1e-31
>seq1474
Length=13610
Score = 152 bits (168), Expect = 1e-31
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| || || || || || || || || | ||||| || | ||||||
Sbjct 6446 ACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGT 6505
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| || |||||||| | || || |||||||| ||||||||
Sbjct 6506 GCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACC 6565
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||| ||| || || ||||||||||| | ||| || || |
Sbjct 6566 CTCCTTGTCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAG 6625
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||||||||| || | |||||| | ||| | |||||
Sbjct 6626 CGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| || || || || || || || |||| || || ||| || ||
Sbjct 6218 ACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGT 6277
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| | |||||| |||||||||||||| || || |||||||| ||||||||
Sbjct 6278 ACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACC 6337
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || || ||||| |||||| || || ||||| || | || || || ||
Sbjct 6338 CTCCTTATCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAA 6397
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||||||||| ||||| || || | ||| | |||||
Sbjct 6398 CGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
>seq1284
Length=15898
Score = 152 bits (168), Expect = 1e-31
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| |||||||| ||||| || || |||| ||||| |||| || ||
Sbjct 6271 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 6212
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| || || || |||||||| || || ||
Sbjct 6211 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 6152
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 6151 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAG 6092
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||||||||||| || || | ||| | |||||
Sbjct 6091 GGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192491259894116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |