Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1284 123 6e-23 seq1474 111 4e-19 >seq1284 Length=15898 Score = 123 bits (136), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | || || Sbjct 6261 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 6202 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || | ||||||||| | | ||| || ||||| | Sbjct 6201 TCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGT 6144 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | |||| || ||| || ||||| || |||| Sbjct 6143 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAG 6084 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || ||||| ||||||| |||||| Sbjct 6083 TCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050 >seq1474 Length=13610 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || || |||||||| || | ||||| | ||||| Sbjct 6456 AGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCATCC 6515 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | | ||||||||| | | || || ||||| | Sbjct 6516 TCAAGCTGCTTT--CCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGT 6573 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || || || | || | | |||||||| || || || || ||||| | Sbjct 6574 CTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCG 6633 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || ||||| || ||||| | |||||| Sbjct 6634 TCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || || ||||| || |||||||| || ||| | || | || || Sbjct 6227 GAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTC 6286 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| | ||||| || ||||||||||| | ||||||||| | | || || ||||| Sbjct 6287 TTCCAACTGCTTT--CCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTA 6344 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || || || | || | |||| || ||| ||||| | ||||| Sbjct 6345 TCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATC 6404 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||| ||||||| |||||| Sbjct 6405 GTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153782156377994