Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1284 123 6e-23
seq1474 111 4e-19
>seq1284
Length=15898
Score = 123 bits (136), Expect = 6e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || ||||||||||| |||| | || | || ||
Sbjct 6261 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 6202
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||||||||| || | ||||||||| | | ||| || ||||| |
Sbjct 6201 TCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGT 6144
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | | |||| || ||| || ||||| || ||||
Sbjct 6143 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAG 6084
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| |||||||| || ||||| ||||||| ||||||
Sbjct 6083 TCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050
>seq1474
Length=13610
Score = 111 bits (122), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||| || || ||||| || || |||||||| || | ||||| | |||||
Sbjct 6456 AGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCATCC 6515
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||||||||| | | ||||||||| | | || || ||||| |
Sbjct 6516 TCAAGCTGCTTT--CCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGT 6573
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
|||| || || || || | || | | |||||||| || || || || ||||| |
Sbjct 6574 CTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCG 6633
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || ||||| || ||||| | ||||||
Sbjct 6634 TCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 95.1 bits (104), Expect = 3e-14
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| || || ||||| || |||||||| || ||| | || | || ||
Sbjct 6227 GAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTC 6286
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||| | ||||| || ||||||||||| | ||||||||| | | || || |||||
Sbjct 6287 TTCCAACTGCTTT--CCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTA 6344
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|| ||||| || || || | || | |||| || ||| ||||| | |||||
Sbjct 6345 TCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATC 6404
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || | ||||| ||||||| ||||||
Sbjct 6405 GTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153782156377994
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |