Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1474 172 1e-37 seq1284 168 1e-36 >seq1474 Length=13610 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || ||||| | || || || || ||||||||||| | Sbjct 6440 ACCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGA 6499 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| || || || ||||| |||||||| || || ||||| || Sbjct 6500 CAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGG 6559 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||||||||||||| | || ||| | || || ||||| |||| ||| || Sbjct 6560 AATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAAC 6619 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || |||||||| || || | ||| || ||||| |||||||| Sbjct 6620 CTCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| |||| || | || || || || ||||||||||| | Sbjct 6668 ACCACCGCGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 6727 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| ||||| || || |||||||||||||| || |||||| || Sbjct 6728 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGG 6787 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || || ||||| | || || | |||||||| || |||| ||||| Sbjct 6788 AATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGAC 6847 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||||||||| ||||| || || | ||||| |||| Sbjct 6848 CTCGAGAGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 6885 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | || || || ||||||||||| || | Sbjct 6954 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGA 7013 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || || || || || | ||| || ||||| || Sbjct 7014 AAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGG 7073 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | ||||| || || || | ||||| Sbjct 7074 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGAC 7133 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 7134 CTCGAGGGTGATGGTCTTGCCGGT 7157 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || ||||| | || || || |||||||| ||||| Sbjct 6213 CCGCCACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTC 6272 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || | || || || || ||||| | ||| || ||||| ||| Sbjct 6273 AGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGA 6332 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| | || ||| |||| || ||||| || | |||||| Sbjct 6333 ATACCCTCCTTATCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACT 6392 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || |||||||| || ||||| ||||| ||||| |||||||| Sbjct 6393 TCCAACGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439 >seq1284 Length=15898 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 6277 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 6218 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 6217 CAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 6158 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| || | || || Sbjct 6157 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 6098 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 6097 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046704142741556