Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1284 150 1e-31 seq1474 118 8e-22 >seq1284 Length=15898 Score = 150 bits (166), Expect = 1e-31 Identities = 176/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||||| || ||| |||||| ||||||||||| || Sbjct 6280 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 6221 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| || |||||||| ||||| ||||||| |||||||| || | Sbjct 6220 GGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 6161 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || ||||| ||| ||||| ||| || ||| | |||||||||| || Sbjct 6160 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGACGAC 6103 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||||||| | || || ||||| ||||| |||||||| |||||||| |||||||| Sbjct 6102 TCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 6047 >seq1474 Length=13610 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || || || || || |||||| || |||||||| || Sbjct 6437 CATACCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTC 6496 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | ||| | || || |||||||| ||||| |||||||| |||||||| || | Sbjct 6497 CGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 6556 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||| ||||| || |||||| ||| || ||| | |||||||| | |||| Sbjct 6557 AGGAATACCCTCCTTGTCTTGGATCTTCGACTT-AACGTTGTCAATGGTGTCTGAAGATT 6615 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | |||||||||||| || || || || || ||||| || ||||| Sbjct 6616 CAACCTCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| |||||||| || ||| || || |||| |||| |||||| || || || Sbjct 6248 CTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAA 6307 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | ||||||||| || | ||| | ||| ||||| ||| ||||| ||||| | Sbjct 6308 GATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGAATCTTGGACTTCACGTT 6367 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | || || || |||| |||||||||||| || || | ||||| || Sbjct 6368 ATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTGCCAGTCAACGTCTTGAC 6427 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 6428 GAAGATCTGCAT 6439 Score = 105 bits (116), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| || |||||||| |||| ||| ||| |||| || Sbjct 6687 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 6746 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||||||||||||| || | || | || ||||| ||| Sbjct 6747 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGA 6806 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || || || | || || ||||| | || || |||| Sbjct 6807 ATCTTCGACTTGACATTGT--CGATAGTATCAGAAGACTCGACCTCGAGAGTGATGGTCT 6864 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || ||||| ||||| |||| Sbjct 6865 TGCCAGTGAGCGTCTTGACGA 6885 Score = 98.7 bits (108), Expect = 7e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| |||||||||||||||| || ||| |||| || Sbjct 6973 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCA 7032 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || || | ||||||||| || | || | ||| ||||| ||| Sbjct 7033 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGA 7092 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| ||| || ||||| | || || ||||| Sbjct 7093 ATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 7152 Query 44309 CCCGTGA 44315 || |||| Sbjct 7153 CCGGTGA 7159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359978931380838