Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1284 150 1e-31
seq1474 118 8e-22
>seq1284
Length=15898
Score = 150 bits (166), Expect = 1e-31
Identities = 176/236 (75%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||| | || |||||||| || ||| |||||| ||||||||||| ||
Sbjct 6280 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 6221
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || ||| |||| || |||||||| ||||| ||||||| |||||||| || |
Sbjct 6220 GGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 6161
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284
|| | || ||||| ||| ||||| ||| || ||| | |||||||||| ||
Sbjct 6160 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGACGAC 6103
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
|||||||| | || || ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 6102 TCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 6047
>seq1474
Length=13610
Score = 118 bits (130), Expect = 8e-22
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||| | || || || || || || |||||| || |||||||| ||
Sbjct 6437 CATACCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTC 6496
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| | ||| | || || |||||||| ||||| |||||||| |||||||| || |
Sbjct 6497 CGACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 6556
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
||| | ||| ||||| || |||||| ||| || ||| | |||||||| | ||||
Sbjct 6557 AGGAATACCCTCCTTGTCTTGGATCTTCGACTT-AACGTTGTCAATGGTGTCTGAAGATT 6615
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||| | |||||||||||| || || || || || ||||| || |||||
Sbjct 6616 CAACCTCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| |||||||| || ||| || || |||| |||| |||||| || || ||
Sbjct 6248 CTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAA 6307
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||| | ||||||||| || | ||| | ||| ||||| ||| ||||| ||||| |
Sbjct 6308 GATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGAATCTTGGACTTCACGTT 6367
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | || || || |||| |||||||||||| || || | ||||| ||
Sbjct 6368 ATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTGCCAGTCAACGTCTTGAC 6427
Query 44326 GAAGATTTGCAT 44337
|||||| |||||
Sbjct 6428 GAAGATCTGCAT 6439
Score = 105 bits (116), Expect = 5e-18
Identities = 145/201 (72%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || || |||||| || |||||||| |||| ||| ||| |||| ||
Sbjct 6687 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 6746
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||||||||||||||| || | || | || ||||| |||
Sbjct 6747 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGA 6806
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | || || || | || || ||||| | || || ||||
Sbjct 6807 ATCTTCGACTTGACATTGT--CGATAGTATCAGAAGACTCGACCTCGAGAGTGATGGTCT 6864
Query 44307 TTCCCGTGAGGGTCTTCACGA 44327
| || ||||| ||||| ||||
Sbjct 6865 TGCCAGTGAGCGTCTTGACGA 6885
Score = 98.7 bits (108), Expect = 7e-16
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| || |||||| |||||||||||||||| || ||| |||| ||
Sbjct 6973 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCA 7032
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || || || | ||||||||| || | || | ||| ||||| |||
Sbjct 7033 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGA 7092
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | ||||| |||| ||| || ||||| | || || |||||
Sbjct 7093 ATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 7152
Query 44309 CCCGTGA 44315
|| ||||
Sbjct 7153 CCGGTGA 7159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359978931380838
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |