Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 150 4e-31
seq1284 141 2e-28
>seq1474
Length=13610
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| |||||||| || || || ||||| || |||||||| ||| ||||||
Sbjct 6664 CAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCAGAC 6605
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||| || ||||| || || || ||||| ||||||||
Sbjct 6604 ACCATTGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAGCAG 6545
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||||| || ||||| | ||| | | || || ||| |
Sbjct 6544 CGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAACATT 6485
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| |||||||| ||
Sbjct 6484 CAGAAGGAGTCAACCCTGCATCTCGT 6459
Score = 131 bits (144), Expect = 4e-25
Identities = 143/189 (76%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||||||||| || ||| || |||||||| ||||||||
Sbjct 7159 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACGTCAAGT 7100
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| || || || || || |||||||| || || || ||||| || |
Sbjct 7099 CCAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGCA 7040
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || || || | || ||| ||||||| ||| |||| || || || || || |
Sbjct 7039 AGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCTACCCTTC 6980
Query 178123 ATCTTGTTT 178131
| |||| ||
Sbjct 6979 A-CTTGGTT 6972
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || ||||| || | || || || || |||
Sbjct 6436 CAGATCTTCGTCAAGACGTTGACTGGCAAGACGATTACGTTGGAAGTCGAGTCATCTGAC 6377
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||||||||| || || || || ||||| ||||||||
Sbjct 6376 ACGATTGATAACGTGAAGTCCAAGATTCAGGATAAGGAGGGTATTCCTCCCGACCAGCAG 6317
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| ||||| ||| | ||||| || | || || ||| |||||| ||
Sbjct 6316 CGTCTTATCTTCGCTGGAAAGCAGTTGGAAGACGGTCGTACCCTGAGCGACTATAACATC 6257
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| |||||||| ||
Sbjct 6256 CAGAAGGAGTCAACCCTGCATCTCGT 6231
Score = 93.3 bits (102), Expect = 1e-13
Identities = 140/198 (71%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || ||||| |||||||| || || || || ||||
Sbjct 6885 TCGTCAAGACGCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCTTCTGATACTATCG 6826
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||||||||| || || || || || || |||||||| || | |
Sbjct 6825 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGA 6766
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || || || || || || | || || |||| || ||| | || || |
Sbjct 6765 TCTTTGCTGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGG 6706
Query 178111 AATCAACACTGCATCTTG 178128
| || || || || ||||
Sbjct 6705 AGTCTACCCTCCA-CTTG 6689
>seq1284
Length=15898
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || |||||||| |||||||| || |||
Sbjct 6053 CAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 6112
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 6113 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 6172
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| |||||||| || || | || || |||| || ||| ||
Sbjct 6173 CGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATC 6232
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 6233 CAGAAGGAGTCCACCCTCCACCTGGT 6258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203690884785116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |