Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1284 170 2e-37
seq1474 131 2e-25
seq657 86.0 6e-12
>seq1284
Length=15898
Score = 170 bits (188), Expect = 2e-37
Identities = 177/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct 6276 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6217
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| | |||
Sbjct 6216 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 6157
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||| ||||||||
Sbjct 6156 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACTCCA 6099
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || |||||||| ||||| ||||| |||||||||
Sbjct 6098 CCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 6049
>seq1474
Length=13610
Score = 131 bits (144), Expect = 2e-25
Identities = 170/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | || |||||||| || ||||||||| ||||||||||||
Sbjct 6212 GCCGCCACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCT 6271
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| || |||| || | |||||| || ||||| || || ||||| ||||| | ||
Sbjct 6272 CAGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 6331
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
|| | |||||| ||| ||| | || | |||| ||| | | ||||| |||||
Sbjct 6332 AATACCCTCCTTATCC-TGAATCTTGGACTTC-ACGTTATCAATCGTGTCAGATGACTCG 6389
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| ||| ||||| || || |||| |||||| ||||| ||||||||
Sbjct 6390 ACTTCCAACGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || |||||||| || ||||||||||||||| ||||| ||
Sbjct 6441 CCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGAC 6500
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || |||||||| |||||||| |||| |||||| ||||| | |||
Sbjct 6501 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 6560
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| || ||| |||| | | | ||||| || || ||
Sbjct 6561 ATACCCTCCTTGTCTTGGATCTTCGACTT-AACGTTGTCAATGGTGTCTGAAGATTCAAC 6619
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | ||| ||||| || || || || || || ||||||||||||||
Sbjct 6620 CTCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 123 bits (136), Expect = 2e-23
Identities = 162/220 (74%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | |||| || || || ||||||||||||||| |||||||||
Sbjct 6669 CCACCGCGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 6728
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || || |||||||| || || |||| ||||| ||||| | ||||
Sbjct 6729 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 6788
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||| ||| ||| | || | ||| || | || | ||| || |||||
Sbjct 6789 ATGCCCTCCTTATCC-TGAATCTTCGACTTGACATTGTCG--ATAGTATCAGAAGACTCG 6845
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||||| | || || || || || || |||||||| ||||
Sbjct 6846 ACCTCGAGAGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 6885
Score = 100 bits (110), Expect = 3e-16
Identities = 82/100 (82%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| || ||||| |||||||| |||| || ||||||||||| |||||
Sbjct 6990 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 7049
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
|| || ||||| ||||| | ||||| | ||||||||||
Sbjct 7050 AATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 7089
>seq657
Length=61752
Score = 86.0 bits (94), Expect = 6e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 85806 GCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCGAC 85865
|| || || || |||||||| |||| || |||||| |||||||| |||||||||
Sbjct 3572 GCTCCCCGCTCTGGCCTCGCTTCCAAGAACTTCATCGACACCGGCGCCGGCGTCATCGAC 3631
Query 85866 GCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||| | |||| || | ||||||||||||| |||
Sbjct 3632 GCCGACTACCGCGGCCAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 3678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462288894216800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |