Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq449 152 1e-31 >seq449 Length=641369 Score = 152 bits (168), Expect = 1e-31 Identities = 324/473 (68%), Gaps = 12/473 (3%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||||| ||||||| || |||| | ||||| ||||| | ||| ||| ||| Sbjct 272264 TTTGCCCAGCGTCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCTTC 272205 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||| |||||| ||| ||| | ||||| || || | ||||||||| Sbjct 272204 GCTTCCATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCTCTAACGAG 272145 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 | ||| ||| |||||||||||||| || | | |||| | || ||| ||| | || Sbjct 272144 CTTATCTCTCGTGACGAGGGTCTCCA-CACCGACTTCGCCTGCCTCTTGTTTTCTCACCT 272086 Query 230352 CCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAA 230408 | ||||| || || | || ||||| | | || ||| || || || | | Sbjct 272085 CAAGAACC-GC--CCTAGCAAGCAGGTCATTGAGGACATTATTGTCGACGCTGTCAAGAT 272029 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAAC 230467 || |||||||| | || ||| | || || ||| ||| | ||||||||| | |||| Sbjct 272028 TGAGCAGGAGTTCTTGACCGAGGCTCTGCCCTG-CGCTCTTCTCGGCATGAACTC-GAAC 271971 Query 230468 TT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| ||||||||||| ||||| || ||||| | ||||||| || || || | Sbjct 271970 TTGATGAAGCAGTACATCGAGTTCGTTGCGGACCGTCTGCTTGTTGCCCTGGGCAACAAC 271911 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || || ||||| |||| |||||||| | || |||||| ||| || || ||| ||| Sbjct 271910 AAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAG 271851 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||||||||||| |||||||| ||||| |||| | | ||||| ||||| Sbjct 271850 ACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGTCATGAA 271798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057816437219540