Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq289 167 3e-36 >seq289 Length=429572 Score = 167 bits (184), Expect = 3e-36 Identities = 426/649 (66%), Gaps = 62/649 (10%) Strand=Plus/Minus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| | ||| || | ||||| |||| | ||| || ||||| || |||| |||||| Sbjct 230219 CAGCTGCACCTTGAGCGCGTCCACATGGTCCACGTAAACATGCGCATCTCCCATGACGTG 230160 Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAG-GTGGGCGACCATGTAGGTCAGCAGGGAGT 145789 | | | |||||| ||||| | | || | | || | ||||| || ||||| | || Sbjct 230159 CGTCAGGCTGCCGGGCACGAGGTC-GCAAGCGCGTGCAATCATGTGCGTGAGCAGCGCGT 230101 Query 145790 AGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGC 145849 |||| || |||||||||||||| || || |||||||| | ||||| || || | |||| Sbjct 230100 AGCTCGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGAGCGTTGATATAATTGGC 230041 Query 145850 A----------------GG----AGAGC---------TCCCCGCCCGCC----------- 145869 | || ||| | |||| || | || Sbjct 230040 AATGCAGGTGACCCTTGGGCTTCAGATCCTCTCCATCTCCCGGCGCACCGCGAGGTCGCG 229981 Query 145870 --------ACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGG 145920 ||||||||||| ||| | | ||||||||||||||||||||| || Sbjct 229980 GGTATGAGACGTAGAACTGCGCAAAC-ATGTGGCAGGGCGGCAGGGCCATCTTCTTAAGA 229922 Query 145921 TCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATC 145977 || || |||||||| ||| |||||| || | | || ||| ||||| |||||| | Sbjct 229921 TCGGCGGGGTTCCACGCGCTGAGGAGGA---TGCGGCGGTCGTAAGGGTTTGTCTTGAGC 229865 Query 145978 TCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCC 146037 | || | || ||| ||||| |||||||| ||| || |||||||||||||| Sbjct 229864 TTGTGGATGACCTCGGCGAGTTGGTCGACGCCCTGGCCCGTATAGTCTGTCTTGGAGTCG 229805 Query 146038 ACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGC 146097 |||||| |||| || || || | ||| ||||| ||||| || || || ||||| || Sbjct 229804 ACGTACTCGGCGCCAAAATGTCGCCATTGGAAGCCGTACACAGGACCGAGGTCGCCAACT 229745 Query 146098 TCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATC 146157 || | ||| || ||| | | | ||||||| || || || ||||| ||||||||||| Sbjct 229744 TCGCGGTGGGAGAGGCCGACGCTGTCGAGGAACTCGCGCGAGCCGTTTCCGTCCCAGATC 229685 Query 146158 TTGACGCC--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCA 146215 |||||||| | |||| || | | |||| |||| ||| || ||||||||| | Sbjct 229684 TTGACGCCTGCTTCGCTCAGTG--CGAGGGAGGACGTGTTTCCCTCGACGAACCAGAGAA 229627 Query 146216 GCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 |||| ||| ||| | | |||||| | || || || || ||||| Sbjct 229626 GCTCGGCGATGACGGCGCGGAGGAAGACGCGTTTCGTTGTGAGAAGGGG 229578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590072684214320