Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq380 95.1 1e-14 >seq380 Length=739652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | |||||||||||| |||||||| ||||| | Sbjct 523111 CCACCGCGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 523052 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| || |||| || | ||||||||| || Sbjct 523051 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGA 522992 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || || ||| Sbjct 522991 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 522932 Query 21129 TCCACGGTAATGGTCTTGCCGGTTA 21153 || | || |||||||||||||||| Sbjct 522931 TCGAGAGTGATGGTCTTGCCGGTTA 522907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | || |||||||| |||||||| || || | || || | | ||||| Sbjct 523374 CACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTC 523315 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 || || ||||| || |||| || | ||||||||| ||| | ||| |||||||| Sbjct 523314 GAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 523255 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| || || | | ||| |||||| | ||| || | |||||||||||| Sbjct 523254 GATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCTACCTCAAGGGTAATGGTCTT 523195 Query 21146 GCCGGTTAACGTTTTGAC 21163 |||||| | || ||||| Sbjct 523194 GCCGGTGAGTGTCTTGAC 523177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256328373528