Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq449 165 8e-36 seq547 140 3e-28 seq380 120 3e-22 seq487 114 1e-20 >seq449 Length=641369 Score = 165 bits (182), Expect = 8e-36 Identities = 209/285 (73%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | ||||||| | || ||| Sbjct 272717 ATCTGGCAAATGTACAAGAAGGCTGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 272658 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGA-GCGCCAT--TTCATCAAG 116752 ||||||||| ||||||| | | || | | | || | | || |||||| Sbjct 272657 TCCAAGGACCTCCACGACTGGAACAACAAGATCAATGATGATGAGAAATACTTCATCTCT 272598 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| |||||||| ||||||||| ||||||||||| || |||||||| Sbjct 272597 CACATTCTTGCCTTCTTCGCCGCTTCCGACGGCATTGTCAACGAGAACCTTGTCGAGCGC 272538 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| || || | ||||| || |||||||||||||| |||||| ||| Sbjct 272537 TTCAGTGGAGAGGTCCAAGTTCCAGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATG 272478 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||| |||||||| ||| Sbjct 272477 GAGAACATCCACTCTGAGACCTACTCTCTCCTTATCGACACCTAC 272433 Score = 163 bits (180), Expect = 3e-35 Identities = 312/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGC-AGAGAGGCCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| || |||||| ||| | ||| || || |||| | | |||| Sbjct 272311 AGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACCAGA-AGTCCACCTTTGCCCAGCGT 272253 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || ||||| || ||||| ||||| |||||||| || ||||| |||| || Sbjct 272252 CTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCTTCGCTTCCATCTTC 272193 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||| ||||| ||||| ||||||||||| ||||| ||| |||||||| ||||| | Sbjct 272192 TGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCTCTAACGAGCTTATCTCTCGT 272133 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 ||||||||||| || |||||| ||||| | |||| || | | | || || Sbjct 272132 GACGAGGGTCTCCACACCGACTTCGCCTGCCTCTTGTTTTCTCACCTCAAGAACCGCCCT 272073 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | | | ||| || | |||||| ||| || |||||| ||| | Sbjct 272072 AGCAAGCAGGTCATTGAGGACATTATTGTCGACGCTGTCAAGATTGAGCAGGAGTTCTTG 272013 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAA-ACGATGTCGCAATACA 117338 ||||| || ||||| |||| ||| || || | || | |||| |||| ||| |||| Sbjct 272012 ACCGAGGCTCTGCC-CTGCGCTCTTCTCGGCATGAACT-CGAACTTGATGAAGCAGTACA 271955 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 |||||||||| || ||| | ||||| | | |||| | | |||| |||||| | Sbjct 271954 TCGAGTTCGTTGCGGACCGTCTGCTTGTTGCCCTGGGCAACAACAAGGTCTACAAGTCTA 271895 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 ||||||| | ||||| ||| | ||||||| Sbjct 271894 CCAACCCCTTCGACTTCATGGAGAACATCTCC 271863 >seq547 Length=620828 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || |||||| | || || || | || Sbjct 191587 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 191528 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 191527 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 191468 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 191467 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 191408 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || || || || |||| Sbjct 191407 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTGCG 191373 >seq380 Length=739652 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || || || | || ||||| | | Sbjct 523621 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGTCA 523680 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | ||| || |||| ||||| ||||| |||||| | ||||| Sbjct 523681 GACACGATTGACAACG-TGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCA 523739 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || ||| |||| || | ||||| || | ||||||||| Sbjct 523740 GCAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACAA 523799 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||||||| | || || ||||| || | || || | ||||| Sbjct 523800 CATTCAGAAGGAATCAACCCTCCATCTTGTTCTCCGTTTACGTGGCGG 523847 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| |||||||| |||| ||||| || |||||| | | | | ||||| Sbjct 522909 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 522968 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| |||||||| || | |||||||| || || || | ||| ||||| Sbjct 522969 AAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 523028 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | || || ||| |||||||||||| ||||||||| |||| || || Sbjct 523029 CAGCTCGAGGATGGCCGTACGCTCTCCGACTACAACATTCAGAAGGAGTCCACTCTTCA 523087 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || |||||| | || || || | | Sbjct 523393 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTTCA 523452 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || |||| || || ||||| || ||| | |||||| Sbjct 523453 GATACGATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAG 523512 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| || || || |||| || | || || || |||||||||| Sbjct 523513 CAGCGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACAAC 523572 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 523573 ATCCAGAAGGAATCAACCCTTCATCTCGT 523601 >seq487 Length=725459 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 202619 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACGATC 202678 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| || | |||||||| || | Sbjct 202679 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTTG 202738 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| |||||||| ||||||||||||||||||| Sbjct 202739 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAG 202798 Query 40879 G 40879 | Sbjct 202799 G 202799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215606346080