Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq380 143 2e-29 seq547 100 2e-16 seq487 91.5 1e-13 >seq380 Length=739652 Score = 143 bits (158), Expect = 2e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| || | |||||||||||||| |||||||| || ||||||||||||||| Sbjct 523393 TACCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGG 523334 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || ||||||||| || || |||||| | || || |||||||| ||||| | Sbjct 523333 ACAAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGG 523274 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| ||| || | ||| | Sbjct 523273 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCTA 523214 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| | ||| | || |||||||| || || || || Sbjct 523213 CCTCAAGGGTAATGGTCTTGCCGGTGAGTGTCTTGAC 523177 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || ||||||||||| ||||||| |||||| |||||| | Sbjct 523828 CAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCA 523769 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || ||||| |||| ||||| ||||| ||||| || || |||||||||||| || Sbjct 523768 ACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAA 523709 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | ||||| | ||||||||| | || | ||| |||| Sbjct 523708 TCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGC 523649 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || ||||| || || || || ||||| Sbjct 523648 CAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Score = 118 bits (130), Expect = 9e-22 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || ||||||||||| ||| | || || ||||||| Sbjct 523093 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCCTCG 523034 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || |||||||| |||||||| |||||||||||||| Sbjct 523033 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 522974 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | ||||||||||| || | || ||| Sbjct 522973 ATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTG 522914 Query 118710 CCGGT 118714 ||||| Sbjct 522913 CCGGT 522909 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| ||| || ||| || |||||| | || ||||| Sbjct 523589 GTTGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAATTGCTTTCCG 523530 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| ||||| || || |||||||| || ||| || || Sbjct 523529 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTTGGACTTG 523470 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || || | ||| ||||| | ||| | || ||||| || || || Sbjct 523469 ACATTGTCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTC 523410 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 523409 TTGACGAAAATCTGCAT 523393 >seq547 Length=620828 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||||||||||| Sbjct 191384 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 191443 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| | |||||||| ||||| || |||||||||||||| || || Sbjct 191444 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 191503 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| ||||| | ||| | || || || || Sbjct 191504 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGT 191563 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 191564 AAGGGTCTTCACGAAGATCTGCATG 191588 >seq487 Length=725459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| ||||||||||| || || ||| |||| Sbjct 202797 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 202738 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || ||||| |||||||||||||| || || || || | ||| Sbjct 202737 AAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 202678 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||| | | ||||||||| | ||| | || ||||| ||||| || || || ||| Sbjct 202677 ATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 202618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827449682136