Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq380 143 2e-29
seq547 100 2e-16
seq487 91.5 1e-13
>seq380
Length=739652
Score = 143 bits (158), Expect = 2e-29
Identities = 162/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||||||||| || | |||||||||||||| |||||||| || |||||||||||||||
Sbjct 523393 TACCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGG 523334
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| ||| || ||||||||| || || |||||| | || || |||||||| ||||| |
Sbjct 523333 ACAAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGG 523274
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| |||||||||||||| || || || || | |||| ||| || | ||| |
Sbjct 523273 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCTA 523214
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726
|||| | ||| | || |||||||| || || || ||
Sbjct 523213 CCTCAAGGGTAATGGTCTTGCCGGTGAGTGTCTTGAC 523177
Score = 120 bits (132), Expect = 3e-22
Identities = 152/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| || || || || ||||||||||| ||||||| |||||| |||||| |
Sbjct 523828 CAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCA 523769
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650
||| || ||||| |||| ||||| ||||| ||||| || || |||||||||||| ||
Sbjct 523768 ACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAA 523709
Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710
| || || || | || | ||||| | ||||||||| | || | ||| ||||
Sbjct 523708 TCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGC 523649
Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || ||||| || || || || |||||
Sbjct 523648 CAGTGAGAGTCTTGACGAAGATTTGCAT 523621
Score = 118 bits (130), Expect = 9e-22
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || ||||||||||| ||| | || || |||||||
Sbjct 523093 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCCTCG 523034
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| | || || |||||||| |||||||| ||||||||||||||
Sbjct 523033 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 522974
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | | ||||||||||| || | || |||
Sbjct 522973 ATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTG 522914
Query 118710 CCGGT 118714
|||||
Sbjct 522913 CCGGT 522909
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || |||||||| ||| || ||| || |||||| | || |||||
Sbjct 523589 GTTGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAATTGCTTTCCG 523530
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||| ||||| || || |||||||| || ||| || ||
Sbjct 523529 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTTGGACTTG 523470
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| || || | ||| ||||| | ||| | || ||||| || || ||
Sbjct 523469 ACATTGTCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTC 523410
Query 118722 TTTACAAAAATCTGCAT 118738
|| || |||||||||||
Sbjct 523409 TTGACGAAAATCTGCAT 523393
>seq547
Length=620828
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| ||| | ||||| |||||||||||
Sbjct 191384 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 191443
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || ||| |||| | |||||||| ||||| || |||||||||||||| || ||
Sbjct 191444 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 191503
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| |||||| | ||| ||||| | ||| | || || || ||
Sbjct 191504 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGT 191563
Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || |||||||||
Sbjct 191564 AAGGGTCTTCACGAAGATCTGCATG 191588
>seq487
Length=725459
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| ||||||||||| || || ||| ||||
Sbjct 202797 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 202738
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| || ||||| |||||||||||||| || || || || | |||
Sbjct 202737 AAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 202678
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||| | | ||||||||| | ||| | || ||||| ||||| || || || |||
Sbjct 202677 ATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 202618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827449682136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |