Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq380 107 2e-18 seq547 98.7 1e-15 seq487 84.2 3e-11 >seq380 Length=739652 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | |||||||||||||| || | || |||||| ||||| |||||||| | | Sbjct 523391 CCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGAC 523332 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || || ||||| |||||||| || || ||||||||||||| || Sbjct 523331 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGA 523272 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || |||| ||| | | | || || || || || Sbjct 523271 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCAGATGACTCTAC 523213 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 || | || ||||| ||||| || || ||||| || Sbjct 523212 CTCAAGGGTAATGGTCTTGCCGGTGAGTGTCTTGAC 523177 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | |||||| | || | ||| | || ||||| ||||| ||||| Sbjct 523853 TATTGACCGCCACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAG 523794 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || |||||| || | || || | |||||||||||| || || || || ||||||||| Sbjct 523793 TCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCG 523734 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129 | || | | |||||||| | ||| | || | | ||| | | | |||||| ||| Sbjct 523733 GGGGGGATACCCTCCTTGT-CTTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGA 523675 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | ||| || || ||||| || || ||||| || ||||||||||| Sbjct 523674 CTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| ||||| ||||| || | || || || | || || Sbjct 523093 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCCTCG 523034 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || || ||||||||||||| || | || |||||||||| | Sbjct 523033 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 522974 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | |||||| || || || |||| |||||||| ||| Sbjct 522973 ATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTG 522914 Query 43155 CCCGTTA 43161 || |||| Sbjct 522913 CCGGTTA 522907 >seq547 Length=620828 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 191396 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 191455 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 191456 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 191515 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 191516 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTAAGGGTCTTCAC 191575 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 191576 GAAGATCTGCAT 191587 >seq487 Length=725459 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 202799 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 202740 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 202739 TCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 202680 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 202679 CGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 202620 Query 43174 A 43174 | Sbjct 202619 A 202619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813611572240