Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq516 129 1e-24 seq505 96.9 7e-15 >seq516 Length=1641395 Score = 129 bits (142), Expect = 1e-24 Identities = 408/628 (65%), Gaps = 21/628 (3%) Strand=Plus/Minus Query 248790 CGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAA 248849 ||| |||| ||| | | || || | ||| | | ||||| ||||| || || |||| Sbjct 1417130 CGCCATTGTCTATGACCGTGACTTCAATTACCAATACTTTGGCTTCAAGACCCTTGAGAG 1417071 Query 248850 ATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCG 248909 || || |||||||| | || || ||||||| || || ||||||||| | ||||| Sbjct 1417070 GTCATACCTCCTCAAGCTGGACGGGAAGATCGCCGAGAGACCCCAGCACATGATCATGCG 1417011 Query 248910 AGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAAT 248969 || |||||||| || ||| || | ||| |||| ||||||| |||| | || Sbjct 1417010 TGTTGCTGTCGGTATCTGGGGGGACAACGTTGAGCGCGTCATCGAGACCTACAACTTGAT 1416951 Query 248970 GAGTGAACGCTGGATG---ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAA 249026 | | || || | | || || ||| | || || || ||||||||||||||| | | Sbjct 1416950 G--TCAA-GCAAGTTTTTCACCCACGCCTCTCCCACACTGTTCAACGCCGGTACCCCCCA 1416894 Query 249027 CAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTA 249086 ||| ||| || ||||| ||| | | |||| | || ||||| |||| ||||| || Sbjct 1416893 GGCTCAACTGTCTTCTTGCTTCCTTGTCGACATGAAGGAGGACTCCATCGAAGGCATCTA 1416834 Query 249087 TGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTC 249143 ||||| || | ||||| || | ||| || || | || ||||| || || | Sbjct 1416833 CGACACTCTCA---AGACGTGTGCCATGATCTCAAAGATGGCTGGCGGCATTGGCATGAA 1416777 Query 249144 CGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGG 249203 |||| | ||| || || | || ||||||||| || || ||||| | | || Sbjct 1416776 CGTCCACCGCATTCGCGCTACTGGCTCGTACATCGCCGGCACCAATGGCACCTCCAACGG 1416717 Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG--- 249260 | || | ||| | |||||| || | |||||| | | | || |||||| || Sbjct 1416716 TGTCATCCCCATGCTTCGAGTTTTCAACAACACCGCTCGCTACGTCGACCAGGGTGGCAA 1416657 Query 249261 ---GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGA 249317 ||||| || | |||||||| ||| | || |||||||||||| | || || Sbjct 1416656 CAAGCGCC---CCGGCGCCTTCGCCATCTATCTCGAGCCCTGGCACGCCGATGTTTTCGA 1416600 Query 249318 GTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTA 249377 |||| |||| | |||||| ||||||| ||| | | || || || |||||| Sbjct 1416599 GTTCTTGGATCTCCGCAAGAACCACGGCAAAGAGGAGGTTCGTGCCCGCGATCTCTTCCT 1416540 Query 249378 CGGCCTGTGGGTCTCCGACTTGTTCATG 249405 | ||| ||| | |||| | |||||| Sbjct 1416539 TGCCCTCTGGATTCCCGATCTCTTCATG 1416512 >seq505 Length=304317 Score = 96.9 bits (106), Expect = 7e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || || || || ||||||||||| || ||||| || ||||| || | | | Sbjct 176757 TCTACGGCCCGCCGGGGACGGGCAAGACGTCGACGATCCTCGCCCTGGCGCGCCGCATCT 176698 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 |||| | ||||||| | || ||||| ||||| ||||| || ||||| ||||| Sbjct 176697 ACGGCGCCGAGAACATGCGTCAGATGGTGCTGGAGCTCAACGCCTCGGACGACCGCGGCA 176638 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 | |||||||| ||||| |||||||||| || Sbjct 176637 TCGACGTCGTGCGCGAGCAGATCAAGACCTT 176607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073758723241344