Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq516 385 4e-102 seq449 125 6e-24 seq380 107 2e-18 seq547 87.8 2e-12 >seq516 Length=1641395 Score = 385 bits (426), Expect = 4e-102 Identities = 1231/1893 (65%), Gaps = 48/1893 (3%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| || | | || |||| | || || || || |||||||| Sbjct 1415264 CTGGTCGACAGTGAACTGGATAGGGGCAGCAGCCGCCTGAGTTCGCAGGTAGTACATGCC 1415323 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||||| || | |||||| || || || || || | || || |||| Sbjct 1415324 TGTCTTCAGGCCGAGCTTCCAACCGGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCGG 1415383 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| ||||| ||| ||||| || || || || || ||||| Sbjct 1415384 GTCCTTCATGTGAATGTTGAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCTGCGGC 1415443 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| | | | || ||| || |||||||| |||||||||||||| | | | ||| Sbjct 1415444 CATCTGAACAACGGTCCGCTGAGAGATTTCCCAGACGGTCTTGTACAGAGCCTTCACCTC 1415503 Query 22345 TAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 ||| || |||| || |||| || || ||||| | | ||||| || || Sbjct 1415504 GGCCGGGATG--TTCGGGATGTTCTGAACAGAACCGTTCTCGGCGATGATACGGTTCTTC 1415561 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || | ||| ||||| || || || || ||| |||| || |||| || || Sbjct 1415562 ATGGCATCAGACCACAGGCCCATCTCGACCAGATCCTTGAGAAGCCAGGGGTTGACGACC 1415621 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || |||||||||| || || ||||| ||||| |||||||| ||| |||||||||| | Sbjct 1415622 TGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTACGGTTCGAAGCAC 1415681 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 ||||||| ||||| ||||| | ||| || || ||||| || || | || || | Sbjct 1415682 TCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGCAACAAGCAGACTG 1415741 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 || | | ||||||| | || | ||| ||| ||||||||| | |||||| Sbjct 1415742 TTGCGTACACCGTGCTGCGTGATCTGCTCCTTCAGCGAGTCCCAGTCCCATAAGTCGGAC 1415801 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG---GGCTG-CC 22698 ||| |||| ||||||| || || || | | |||| || | | ||| || Sbjct 1415802 GGCTTCACTC---CCCACATGTCATACTGGAGCTCGCC----CTTGGAGATAGGCGAACC 1415854 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGC 22757 ||||| | ||||| | ||| | | ||| || | ||| | | || || Sbjct 1415855 CTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCCAGCT-GCACCGACATGGTCAGAGCAG 1415913 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCG 22813 ||| || || ||||||||||| || || || | ||| || || ||| ||| Sbjct 1415914 CGTGGTAGATGGTCTCGAAGATCTTTTTATTAAGATCGCGAGCCTCAGGGGAC----TCG 1415969 Query 22814 TACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGT 22873 | |||| ||||| || ||| || || || | ||| || || || | ||||| || Sbjct 1415970 AAGGGCAGACGCAGAGCCAAGAAAGCATCAGCAAGACCTTGGACACCAAGGCCGATAGGG 1416029 Query 22874 CGGTTTTTCAGATTCGACACTTTT----GCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929 |||| || || || || ||||| || | ||| || || ||| || Sbjct 1416030 CGGTGACGCATGTTG----CTGTTACGAGCCTCCGGAACAGGGTAGTGGTTGACATCAAT 1416085 Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | ||||||| ||| | |||| | || | | |||||||| Sbjct 1416086 GATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCTCATGGAGCTTCTGGAAGTCGTA 1416145 Query 22990 A--ACGCCCGATTGTA--CAACAAACTTGTTGAC--GGCGATCGAGGCAAGATTGCATAC 23043 || | || ||||| | ||||| || | | ||||| |||||| | ||||| || Sbjct 1416146 TGCACTCTCG-TTGTAGTCGACAAA--TGCAGGCAGGGCGAGCGAGGCCAAGTTGCAAAC 1416202 Query 23044 GGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTAT 23103 || |||||||| | |||||| | || || || || |||||| | || Sbjct 1416203 AGCGACCTCGTCAGGCGCGCAGTACTCAATGATCTCAGTGCACAGATTGGAATTGCGGAT 1416262 Query 23104 CGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGG 23163 || || | || |||||||||| || || ||| |||||| || |||||| |||| Sbjct 1416263 GGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGATCCTTATAAAGCATGAACGG 1416322 Query 23164 CGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACG 23223 | || |||||| ||| | ||||| || || ||| | | ||||| | | | Sbjct 1416323 GTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCAGAGCTTTTGAGCCTTTAGG-G 1416381 Query 23224 TCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGT 23282 || || ||| ||| || ||||||||| | ||||| || ||||| || | || | Sbjct 1416382 TCTTGCGGCCCTTGCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCAT 1416441 Query 23283 AACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG--AGTCATT 23340 | |||||||| |||||||| | | | ||||||||||| ||||| | | | || || Sbjct 1416442 AGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCAC-TCGCCATTC-TT 1416499 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || | |||| || ||||| || ||||| || || ||| || |||||||| || Sbjct 1416500 TTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGGCACG 1416559 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 ||||||||||||||| |||||| | |||||| || || || || || || ||||| Sbjct 1416560 AACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGAAAACATCGGCGTGCCA 1416619 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 |||||||| || | ||| || ||||| || | ||| ||||| ||||| |||||||| || Sbjct 1416620 GGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCG 1416679 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || ||||||||| | |||| ||||| || | || ||||||||| | ||| ||| Sbjct 1416680 AGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGAGGTGCCATTGGTGCC 1416739 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | ||| || | || |||| | ||| |||| | || ||||| || || Sbjct 1416740 GGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGCCAGCCAT 1416799 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || || || ||||||||||||||||| |||||| |||||| || Sbjct 1416800 CTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTT 1416859 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||| | ||| || ||||||| ||| || | ||| ||| |||| ||||||||| Sbjct 1416860 CATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGT 1416919 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || |||||| || || | | ||||| | ||||| || |||||| || || Sbjct 1416920 GGGAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGTTGTAGGTCTCGATGACGCGCTC 1416979 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 || || || || ||||||| || || ||||| ||||||| || ||||||||| | Sbjct 1416980 AACGTTGTCCCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGC 1417039 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | |||| | |||| || ||||| | | | || || || ||||| || | Sbjct 1417040 GATCTTCCCGTCCAGCTTGAGGAGGTATGACCTCTCAAGGGTCTTGAAGCCAAAGTATTG 1417099 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || |||||||| || | || ||||| || Sbjct 1417100 GTAATTGAAGTCACGGTCATAGACAATGGCGGA 1417132 >seq449 Length=641369 Score = 125 bits (138), Expect = 6e-24 Identities = 258/380 (68%), Gaps = 8/380 (2%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | |||| ||||| | | | |||| || ||| || | Sbjct 272313 CAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACCAGAAGTCCACCTTTGCCCAGCG 272254 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 ||| | || || || ||||| || ||||| |||||| || ||| || | || || Sbjct 272253 TCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCTTCGCTTCCATCTT 272194 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| ||||||| ||||| || |||||||| ||||| || |||||| | || || || Sbjct 272193 CTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCTCTAACGAGCTTATCTCTCG 272134 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 |||||||||||||| || || || || ||||| ||| |||||| |||| |||| Sbjct 272133 TGACGAGGGTCTCCACACCGACTTCGCCTGCCTCTTGTTTTCTCAC---CTCAA-GAACC 272078 Query 58154 GAC---GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 | | || | | ||| ||||||||| ||| || ||| ||| || | |||| Sbjct 272077 GCCCTAGCAAGCAGGTCATTGAGGACATTATTGTCGACGCTGTCAAGATTGAGCAGGAGT 272018 Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGT 58269 | | ||||| || || || || | ||||| |||||| | |||||| ||| Sbjct 272017 TCTTGACCGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCGAACTTGATGAAGCAGT 271958 Query 58270 ACATTGAGTTTGTTGCCGAC 58289 |||| ||||| ||||| ||| Sbjct 271957 ACATCGAGTTCGTTGCGGAC 271938 >seq380 Length=739652 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || ||||| ||||| || | || || || |||| Sbjct 523621 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGTCA 523680 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||||| || | || ||||||||| Sbjct 523681 GACACGATTGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCAG 523740 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| || |||||||| || ||| ||||||| || ||| Sbjct 523741 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACAAC 523800 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || || ||||| || || Sbjct 523801 ATTCAGAAGGAATCAACCCTCCATCTTGTTCT 523832 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| || |||||| | || ||||| | || Sbjct 523393 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTTCA 523452 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||| ||||| || | || ||||||||| Sbjct 523453 GATACGATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAG 523512 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || || ||||| || | ||| || ||| || ||| Sbjct 523513 CAGCGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACAAC 523572 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || |||||||| || || Sbjct 523573 ATCCAGAAGGAATCAACCCTTCATCTCGTCCT 523604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || ||||| |||| || || | ||||||| |||| | ||||| Sbjct 522909 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 522968 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||| ||| | || |||||||||||||| || || ||||||||||| Sbjct 522969 AAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 523028 Query 31337 CAGTT---GGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 ||| | ||| | | || | || | ||| || |||||||| || || || |||||| Sbjct 523029 CAGCTCGAGGATGGCCGTACG-CTCT--CCGACTACAACATTCAGAAGGAGTCCACTCTT 523085 Query 31394 CATCTGGTACT 31404 || |||| || Sbjct 523086 CACTTGGTTCT 523096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || || ||| | || || || | || || | ||| Sbjct 523175 TCGTCAAGACACTCACCGGCAAGACCATTACCCTTGAGGTAGAGTCATCTGATACCATCG 523234 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||| ||| | || |||||||||||||| || | Sbjct 523235 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGGCTGA 523294 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||||||||| || | || || | ||| || |||||| |||||||| || | Sbjct 523295 TTTTCGCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGG 523354 Query 31383 AATCGACTCTTCATCTGGT 31401 | || || || || |||| Sbjct 523355 AGTCTACGCTCCACTTGGT 523373 >seq547 Length=620828 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 191592 CAATCATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGT 191533 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 191532 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 191473 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||| | || ||||| ||||| ||| | || ||| Sbjct 191472 ACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGAC 191432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763290779360