Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq449 118 2e-21 seq516 107 4e-18 >seq449 Length=641369 Score = 118 bits (130), Expect = 2e-21 Identities = 297/443 (67%), Gaps = 15/443 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| |||||| Sbjct 272249 GTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCTTCGCTTCCATCTTCTGG 272190 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | ||| | |||| ||||| || | ||| || ||| | || ||| | ||| Sbjct 272189 CTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCTCTAACGAGCTTATCTCTCGTGAC 272130 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA--TACCC 102095 || ||||| || |||||| || ||| | |||| | | || ||| Sbjct 272129 GAGGGTCTCCACACCGACTTCGCCTGCCTCTTGTTTTCTCA----CCTCAAGAACCGCCC 272074 Query 102096 CATCAAGAGAAAGG--ATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | |||| ||| ||| || ||| | || || ||| ||||| || || || Sbjct 272073 TAGCAAG---CAGGTCATTGAGGACATTATTGTCGACGCTGTCAAGATTGAGCAGGAGTT 272017 Query 102154 TCTCACAGTTTCCCTG-CCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | || | | ||| |||| || | || ||||||| || ||||||| |||| Sbjct 272016 CTTGACCGAGGCTCTGCCCTGCGCTCTT-CTCGGCATGAACTCGAACTTGATGAAGCAGT 271958 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA-AAGCACTATAAT 102271 |||| || || || || || || | |||| |||| | | || ||| ||| || Sbjct 271957 ACATCGAGTTCGTTGCGGACCGTCTGCTTGTTGCCCTGGG-CAACAACAAGGTCTACAAG 271899 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 ||||||||||||| |||||||| || || ||||||| ||||||||||| || Sbjct 271898 TCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTC 271839 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || ||| | || ||||| || || Sbjct 271838 GAGAAGCGTGTTGCCGACTACCA 271816 >seq516 Length=1641395 Score = 107 bits (118), Expect = 4e-18 Identities = 123/164 (75%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 94393 CCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCG 94452 || ||||| || ||| || ||||| ||||| |||| |||||||||||||| | |||| Sbjct 1416390 CCCTTGCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCG 1416449 Query 94453 GAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT---CACT 94509 | |||||| |||||||||| ||| ||||| || | ||| || ||| ||| ||| Sbjct 1416450 GCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCA---CTCGCCATTCTTTTCCACC 1416506 Query 94510 CTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 |||| |||||||||||| | | ||||| || |||| ||||| Sbjct 1416507 CTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATC 1416550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989576925092890