Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq449 118 2e-21
seq516 107 4e-18
>seq449
Length=641369
Score = 118 bits (130), Expect = 2e-21
Identities = 297/443 (67%), Gaps = 15/443 (3%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 272249 GTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCTTCGCTTCCATCTTCTGG 272190
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| ||||| | ||| | |||| ||||| || | ||| || ||| | || ||| | |||
Sbjct 272189 CTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCTCTAACGAGCTTATCTCTCGTGAC 272130
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA--TACCC 102095
|| ||||| || |||||| || ||| | |||| | | || |||
Sbjct 272129 GAGGGTCTCCACACCGACTTCGCCTGCCTCTTGTTTTCTCA----CCTCAAGAACCGCCC 272074
Query 102096 CATCAAGAGAAAGG--ATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153
| |||| ||| ||| || ||| | || || ||| ||||| || || ||
Sbjct 272073 TAGCAAG---CAGGTCATTGAGGACATTATTGTCGACGCTGTCAAGATTGAGCAGGAGTT 272017
Query 102154 TCTCACAGTTTCCCTG-CCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
| || | | ||| |||| || | || ||||||| || ||||||| ||||
Sbjct 272016 CTTGACCGAGGCTCTGCCCTGCGCTCTT-CTCGGCATGAACTCGAACTTGATGAAGCAGT 271958
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA-AAGCACTATAAT 102271
|||| || || || || || || | |||| |||| | | || ||| ||| ||
Sbjct 271957 ACATCGAGTTCGTTGCGGACCGTCTGCTTGTTGCCCTGGG-CAACAACAAGGTCTACAAG 271899
Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331
||||||||||||| |||||||| || || ||||||| ||||||||||| ||
Sbjct 271898 TCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTC 271839
Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354
|| ||| | || ||||| || ||
Sbjct 271838 GAGAAGCGTGTTGCCGACTACCA 271816
>seq516
Length=1641395
Score = 107 bits (118), Expect = 4e-18
Identities = 123/164 (75%), Gaps = 6/164 (4%)
Strand=Plus/Plus
Query 94393 CCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCG 94452
|| ||||| || ||| || ||||| ||||| |||| |||||||||||||| | ||||
Sbjct 1416390 CCCTTGCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCG 1416449
Query 94453 GAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT---CACT 94509
| |||||| |||||||||| ||| ||||| || | ||| || ||| ||| |||
Sbjct 1416450 GCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCA---CTCGCCATTCTTTTCCACC 1416506
Query 94510 CTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553
|||| |||||||||||| | | ||||| || |||| |||||
Sbjct 1416507 CTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATC 1416550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989576925092890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |