Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq449 95.1 2e-14 >seq449 Length=641369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||| ||| ||||||||||| | | || | ||||| || || || || Sbjct 272104 CAGGCGAAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGA 272163 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || || ||||| || ||||| || ||||| || || | || |||||| Sbjct 272164 CCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAG 272223 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATG 36333 || || || || || |||||||||| || | || || || | ||| ||| Sbjct 272224 ATACCCTCAACGGCAGCAAAGGCAACTAGACGCTGGGCA-AAGGTGGACTTCTGGTCGGA 272282 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 |||||||| ||||||| ||||||||||| Sbjct 272283 GATCCACTTGAGAGCCCAGTCGGCCTTCTT 272312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168209244720