Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq380 111 2e-19 seq547 86.0 6e-12 >seq380 Length=739652 Score = 111 bits (122), Expect = 2e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| |||||||| | ||| | || | || || || || |||||||| || ||| Sbjct 523850 TGACCGCCACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCG 523791 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| || || | ||| ||||||||| |||| ||||||||||| ||||| Sbjct 523790 CTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGG 523731 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| | || | || | | || | ||||| | | ||| Sbjct 523730 GGGATACCCTCCTTGTC-TTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTC 523672 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | || | ||||||||| || | || || ||||| ||||||||| || Sbjct 523671 GACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCATACCT 523617 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || |||||||| || ||||| | ||||||||| || |||||||| |||||| | Sbjct 523391 CCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGAC 523332 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || ||||| || || ||||| | ||||| || ||||| ||||| || Sbjct 523331 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGA 523272 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | || || | | ||| ||| Sbjct 523271 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCTACC 523212 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 |||| ||| | ||||||||||| | || || |||| Sbjct 523211 TCAAGGGTAATGGTCTTGCCGGTGAGTGTCTTGACGA 523175 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| ||||||| || ||||| || |||||||| || ||| Sbjct 523112 GCCACCGCGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 523053 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || |||||||| || ||||| | ||||| || ||||| |||||||| Sbjct 523052 GAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGG 522993 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||||| || ||| || Sbjct 522992 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 522933 Query 139717 CTCAACGGTCACCGTCTTGCCGGT 139740 ||| | || | ||||||||||| Sbjct 522932 CTCGAGAGTGATGGTCTTGCCGGT 522909 >seq547 Length=620828 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 191361 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 191420 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || || || |||||| || ||||| ||||| || Sbjct 191421 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 191480 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||||| | ||||||| Sbjct 191481 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 191540 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | || || ||||| || ||||| Sbjct 191541 TCAAGGGTGATAGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCAT 191587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060539953600