Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq449 109 8e-19 >seq449 Length=641369 Score = 109 bits (120), Expect = 8e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||| ||||||||||| | | || || ||||| || || || || Sbjct 272104 CAGGCGAAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGA 272163 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||| || || | || ||||||| Sbjct 272164 CCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAG 272223 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGT 50136 || || || || || ||||||||||| || | || || | ||| | ||| Sbjct 272224 ATACCCTCAACGGCAGCAAAGGCAACTAGACGCTGGGCAAAGGTGGACTTCTGGTCGGAG 272283 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 |||||||| ||||||| ||||||||||| Sbjct 272284 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 272312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263790075120