Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq449 150 3e-31 seq516 147 3e-30 seq289 89.7 8e-13 >seq449 Length=641369 Score = 150 bits (166), Expect = 3e-31 Identities = 210/290 (72%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| ||||||| || ||||| | ||| ||| | |||||| Sbjct 272717 ATCTGGCAAATGTACAAGAAGGCTGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 272658 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | | | ||| |||| | | || || || Sbjct 272657 TCCAAGGACCTCCACGACTGGAACAACAAGATCAATGATGATGAGAAATACTTCATCTCT 272598 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 |||||| | |||||||| |||| ||||| || || |||||||| || | ||| || || Sbjct 272597 CACATTCTTGCCTTCTTCGCCGCTTCCGACGGCATTGTCAACGAGAACCTTGTCGA-GCG 272539 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||| | |||| | ||| ||||||||| ||||| ||||| ||||| |||||| Sbjct 272538 CTTCAGTGGAGAG--GTCCAAGTTCCAGAGGCCCGTTGCTTCTACGGCTTCCAGATCATG 272481 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | ||||| || | |||||| || || |||| ||||| Sbjct 272480 ATGGAGAACATCCACTCTGAGACCTACTCTCTCCTTATCGACACCTACAT 272431 Score = 116 bits (128), Expect = 5e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||||||| ||| | ||||| | | ||| | | || || || || || ||||| || Sbjct 272289 GTGGATCTCCGACCAGAAGTCCACCTTTGCCCAGCGTCTAGTTGCCTTTGCTGCCGTTGA 272230 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| ||||||||| ||| || || ||||||| ||||| ||||||||||| ||||| Sbjct 272229 GGGTATCTTCTTTAGCGGTGCCTTCGCTTCCATCTTCTGGCTGAAGAAGCGCGGTCTCAT 272170 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 |||||| ||||| | ||||||| |||| ||||| |||||||| || ||| ||||| Sbjct 272169 GCCCGGTCTGACATTCTCTAACGAGCTTATCTCTCGTGACGAGGGTCTCCACACCGACTT 272110 Query 125570 TGCC 125573 ||| Sbjct 272109 CGCC 272106 >seq516 Length=1641395 Score = 147 bits (162), Expect = 3e-30 Identities = 331/495 (67%), Gaps = 2/495 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || ||||| | ||| |||| | || || |||||||| || Sbjct 1416667 CAGGGTGGCAACAAGCGCCCCGGCGCCTTCGCCATCTATCTCGAGCCCTGGCACGCCGAT 1416608 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 ||||| || || | || | ||||| ||| ||| || |||| || ||| | || Sbjct 1416607 GTTTTCGAGTTCTTGGATCTCCGCAAGAACCACGGCAAAGAGGAGGTTCGTGCCCGCGAT 1416548 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || ||| |||||| | || ||| | ||||||||| | || | | |||| | Sbjct 1416547 CTCTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGGGTGGAAAAGAATGGCGAG 1416488 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||| ||| || || ||||| || |||| |||| |||||||||||| Sbjct 1416487 TGGACGCTCATGTGTCCCAACGAGTGCCCCGGCCTTGCCGACTGCTATGGCGAAGAGTTT 1416428 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||||| ||| | ||||||| |||||| | || |||| | | || | Sbjct 1416427 GAGGCCTTGTATGAGAAGTACGAGCGCGAGGGCAAGGGCCGCAAGAC-CCTAAAGGCTCA 1416369 Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 | | || ||| | ||||| | ||| ||| |||||||| | |||| ||| || || Sbjct 1416368 AAAGCTCTGGTATGCCATTCTCGAGGCACAGACCGAGACTGGTAACCCGTTCATGCTTTA 1416309 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 |||||| || || ||||| |||||||| || | || |||||| ||||| Sbjct 1416308 TAAGGATCACGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAATTCCAA 1416249 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGC 97354 ||||||||| || || | |||||| | | || |||||| || |||||| |||| Sbjct 1416248 TCTGTGCACTGAGATCATTGAGTACTGCGCGCCTGACGAGGTCGCTGTTTGCAACTTGGC 1416189 Query 97355 ATCGGTCAATCTGCC 97369 ||| || ||||| Sbjct 1416188 CTCGCTCGCCCTGCC 1416174 >seq289 Length=429572 Score = 89.7 bits (98), Expect = 8e-13 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 70044 TCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGC 70103 ||||| || || || | ||| ||||| || || || |||||||| ||||| ||| | | Sbjct 229726 TCGGCCTCTCCCACCGCGAAGTTGGCGACCTCGGTCCTGTGTACGGCTTCCAATGGCGAC 229785 Query 70104 ACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA- 70162 | | ||| || |||| || |||| | ||||||||||| |||| ||||| || || ||| Sbjct 229786 ATTTTGGCGCCGAGTACGTCGACTCCAAGACAGACTATACGGGCCAGGGCGTCGACCAAC 229845 Query 70163 TTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGC 70222 | || || |||| ||| |||||||| || || || | | ||| | | || Sbjct 229846 TCGCCGA-GGTCATCCACAAGCTCAAGACAAACCCTTACGACCGCCGCATCCTCCTCAGC 229904 Query 70223 TCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCA 70281 | ||||| || || ||| | | | ||||| || || || || ||| ||||| || || Sbjct 229905 GCGTGGAACCCCGCCGATCTTAAGAAGATGGCCCTGCCGCCCTGCCACATGTTT-GCGCA 229963 Query 70282 GTTTTAC 70288 ||| ||| Sbjct 229964 GTTCTAC 229970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054031112080