Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq545 116 3e-21 >seq545 Length=1333520 Score = 116 bits (128), Expect = 3e-21 Identities = 184/260 (71%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 5495 GTGCGCACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCC 5554 ||||| ||||||||| ||||| ||||| ||||| | | | || || || | Sbjct 813103 GTGCG-ACGCCCGTGCTGCCGAAGCCGCCCGCGCCGCGCACGCTCTCCTCGAGCTCCTGG 813045 Query 5555 ACCTCTTCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC 5613 ||||| | || |||||| | || ||||||| || |||||| || || |||||||| Sbjct 813044 ACCTCGACGACCTCGGGGGT-GAAGATGCGCTCGACGACCAGCTGGGCGATGCGGTCGCC 812986 Query 5614 CGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCG 5673 | | ||| || || ||| | | ||| || |||| || |||| |||||| Sbjct 812985 CTCGGAAATCTCAAAGTCCGTGTCGGAGTGGTTAAAGAGCAGGACCTTGACGTGGCCGCG 812926 Query 5674 GTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||| ||||| || ||||| ||||| ||||||||||| |||| |||| |||||||| Sbjct 812925 GTAGTCTGCGTCGATGACGCCGGCGCCGGTGTCGATGAAGTTCTTGGCCGCGAGGCCGGA 812866 Query 5734 GCGGGGAGCCACGCGGCCGT 5753 | |||||| | |||||||| Sbjct 812865 TCTGGGAGCGATGCGGCCGT 812846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430051475361296