Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq516 116 6e-22 seq487 104 4e-18 >seq516 Length=1641395 Score = 116 bits (128), Expect = 6e-22 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||| Sbjct 1584456 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCTAT 1584514 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1584515 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 1584555 Score = 109 bits (120), Expect = 9e-20 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 16527 TCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTA 16586 ||||| | || |||| || |||| |||| |||| | ||| |||||| || || | Sbjct 1584611 TCTCTCCAGTGATCTACGAGGAGACCCGTGGTGTTCTCAAGTCCTTCCTTGAGGGTGTCA 1584670 Query 16587 TCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATA 16646 | | ||| ||| || ||| |||||||||||||| || |||||||||||||| ||||| Sbjct 1584671 TTCGTGACGCTGTCACCTACACCGAGCACGCTAAGCGCAAGACTGTCACCTCTTTGGATG 1584730 Query 16647 TCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | ||||| || ||||| || |||||||| | | || ||||| || ||||| Sbjct 1584731 TTGTCTACGCGTTGAAGCGCCAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 1584783 >seq487 Length=725459 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 572511 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 572569 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| ||||||||||| || ||||||||| | |||| Sbjct 572570 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 572610 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | ||| ||||| || ||| |||| ||| | Sbjct 572669 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGTCTTTCCTTGAGGGCGTCATCCGTGACG 572728 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| ||||||||||| || || ||||| ||||||||| |||| | || || | Sbjct 572729 CTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTGGACGTTGTTTACG 572788 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | |||||||| || ||||| Sbjct 572789 CTCTCAAGCGCCAGGGCCGCACCCTCTATGGTTTCGGTGGTTAA 572832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074689816694