Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq516 109 5e-19 seq449 95.1 1e-14 >seq516 Length=1641395 Score = 109 bits (120), Expect = 5e-19 Identities = 432/663 (65%), Gaps = 29/663 (4%) Strand=Plus/Plus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 |||||| ||| |||||| || || || | | |||| || |||| ||||||||| ||| Sbjct 1416392 CTTGCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCGGC 1416451 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCT 148354 | ||||| ||||||| ||| ||||| | | ||| | | || ||||| ||||| Sbjct 1416452 AAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCACT---CGCCATTCTTTTCCACCCT 1416508 Query 148355 CTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC 148414 |||||| || ||||| || |||| | ||||| | |||||||| || | ||||| Sbjct 1416509 CTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGGCACGAACCTCCTC 1416568 Query 148415 ---GGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTC 148471 | | | ||||| |||||||| || ||||| || |||||||| ||||| Sbjct 1416569 TTTGCCGTGGTTCTTGCG---GAGATCCAAGAACTCGAAAACATCGGCGTGCCAGGGCTC 1416625 Query 148472 GATGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGC-A 148527 || || | || | |||||| | | || || || || ||||| | ||| ||| Sbjct 1416626 GAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCG-AGCGG 1416684 Query 148528 TGCTATTAAAAACACGCA--ATGCAGGTCCCAATCCCGCCGCA-GTTCCGTTTGTGGATT 148584 || | || ||||| || | ||| | | || ||| | | || || || ||| Sbjct 1416685 TGTTGTTGAAAACTCGAAGCATGGGGATGACA---CCGTTGGAGGTGCCATTGGTGCCGG 1416741 Query 148585 CAATTTTACTA-TTGGTGGCGCGAATTTGAGTGACATTCAGGCCGATGCCGCC-TCCGTG 148642 | | | ||| | || |||||||| | ||| |||| ||| |||||||| || | Sbjct 1416742 CGA-TGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGCCAGCCATC 1416800 Query 148643 TTTAGATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTG 148702 ||| || ||||||||||| ||||| || | |||||||| | || |||||| | Sbjct 1416801 TTT-GAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTT 1416859 Query 148703 AATGTTAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGT 148762 |||| | ||| |||| || |||| ||||| | | || | || || || Sbjct 1416860 CATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGT 1416919 Query 148763 TGGACTAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTT 148821 ||| ||||| ||||| | | |||| | |||||| | |||| ||||| ||| | Sbjct 1416920 GGGAGAGGCGTGGGTGAAAAAC-TTGCTTGACATCAAGTTGTAGGTCTCGATGACGCGCT 1416978 Query 148822 CGATGTCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGGCCTCTCGA 148881 | | || || || || | ||| |||||||| | |||||| || || |||||| Sbjct 1416979 CAACGTTGTCCCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGG 1417038 Query 148882 CGA 148884 ||| Sbjct 1417039 CGA 1417041 >seq449 Length=641369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| ||| | ||||| || || || || || |||||||| | || || ||||| | Sbjct 271815 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTC 271874 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAA-CA 119760 ||| || ||||| || || | || ||| | ||||| || ||||| | ||||| || Sbjct 271875 CATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGGGC-AACAAGCA 271933 Query 119761 GTCGATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAG 119820 | || || || || ||||||||||| | ||| | | ||| |||||||| | | || Sbjct 271934 GACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGAAGAG 271993 Query 119821 CGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAA 119874 || || | ||| | ||| ||||| |||| ||||| | ||| || || |||| Sbjct 271994 CGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAA 272047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478659061329760