Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq516 367 3e-96 >seq516 Length=1641395 Score = 367 bits (406), Expect = 3e-96 Identities = 1070/1633 (66%), Gaps = 40/1633 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| ||| ||| || || || | | | || |||||||| Sbjct 1416937 TTCACCCACGCCTCTCCCACACTGTTCAACGCCGGTACCCCCCAGGCTCAACTGTCTTCT 1416878 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| ||| | | |||||||| || |||||||| || |||| ||||| || |||| Sbjct 1416877 TGCTTCCTTGTCGACATGAAGGAGGACTCCATCGAAGGCATCTACGACACTCTCAAGACG 1416818 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || || |||| || ||||| ||||| | | || ||||| |||| || Sbjct 1416817 TGTGCCATGATCTCAAAGATGGCTGGCGGCATTGGCATGAACG-TCCACCGCATTCGCGC 1416759 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | || |||| |||||| || ||| || || | | |||||||||| Sbjct 1416758 TACTGGCTCGT-ACATCGCCGGCACCAATGGCACCTCCAACGGTGTCATCCCCATGCTTC 1416700 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || |||| || || | ||||||||||||||||| |||||| || || | Sbjct 1416699 GAGTTTTCAACAACACCGCTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCCT 1416640 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || || ||||||||||| || |||||| |||| ||||| | || ||||| || | Sbjct 1416639 TCGCCATCTATCTCGAGCCCTGGCACGCCGATGTTTTCGAGTTCTTGGATCTCCGCAAGA 1416580 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || |||||||| | ||||| || ||||| ||| ||| || ||| || | || | Sbjct 1416579 ACCACGGCAAAGAGGAGGTTCGTGCCCGCGATCTCTTCCTTGCCCTCTGGATTCCCGATC 1416520 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACG 364018 || |||||| | ||||| |||||| ||| | ||| | || || ||| Sbjct 1416519 TCTTCATGAAGAGGGTGGA------AAAGAATGGCGAGTGGACGCTCATGTGTCCCAACG 1416466 Query 364019 AATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 | || || || ||| |||| || ||| || || || | || || | || || ||||| Sbjct 1416465 AGTGCCCCGGCCTTGCCGACTGCTAT--GGCGAAGAGTTTGAGGCCTTGTATGAGAAGTA 1416408 Query 364077 TGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 || ||||| |||| || ||||| | || || ||||| |||| |||||| | Sbjct 1416407 CGAGCGCGAGGGCAAGGGCCGCAAGACCCTAAAGGCTCAAAAGCTCTGGTATGCCATTCT 1416348 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 || | |||| ||||| || | || | ||| | || || ||| ||||||||| Sbjct 1416347 CGAGGCACAGACCGAGACTGGTAACCCGTTCATGCTTTATAAGGATCACGCCAACCGCAA 1416288 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGA 364256 | ||||||| || |||| ||||| || | | ||| || || || ||||| ||||| Sbjct 1416287 GAGCAACCAGAAGAACCTCGGTACCATCCGCAATTCCAATCTGTGCACTGAGATCATTGA 1416228 Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT 364316 ||| ||| || |||||| || || || ||| | || ||| |||| || || || || Sbjct 1416227 GTACTGCGCGCCTGACGAGGTCGCTGTTTGCAACTTGGCCTCGCTCGCCCTGCCTGCATT 1416168 Query 364317 TGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370 ||| || || || | | ||| |||| | || |||| ||| | || Sbjct 1416167 TGTCGACTACAACGAGAGTGCATACGACTTCCAGAAGCTCCATGAGACCACCCAGGTTGT 1416108 Query 364371 TACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG--- 364426 | |||| || ||| | | || || || | || || |||| || || || Sbjct 1416107 TGTACGCAACCTGAACAGGATCATTGATGTCAACCACTACCCTGTTCCGGAGGCTCGTAA 1416048 Query 364427 -AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTT 364485 ||| || |||||||| ||||| || || |||||||| || || || ||||| | | Sbjct 1416047 CAGC-----AACATGCGTCACCGCCCTATCGGCCTTGGTGTCCAAGGTCTTGCTGATGCT 1415993 Query 364486 TTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATC 364545 || || || || | || || || ||||| ||||| | ||| ||||| ||||| Sbjct 1415992 TTCTTGGCTCTGCGTCTGCCCTTCGAGTCCCCTGAGGCTCGCGATCTTAATAAAAAGATC 1415933 Query 364546 TTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGG 364604 || || || || || || || |||| ||| ||| | |||| || |||| Sbjct 1415932 TTCGAGACCATCTACCACGCTGCTCTGACCATGTCG-GTGCAGCTGGCCAAGGAGGAGGG 1415874 Query 364605 AAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATG 364664 | ||| |||| ||||| || ||| | || |||| | |||||| ||| | || Sbjct 1415873 TACCTACGAGTCTTACGAGGGTTCGCCTATCTCCAAGGGCGAGCTCCAGTATGACATGTG 1415814 Query 364665 GAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGC 364723 | || | ||| || | | |||| ||||||| |||| | | | | | | | ||| Sbjct 1415813 GGGAGTGAAGCCGTCCGACTTATGGGACTGGGACTCGCTGAAGGAGC-AGATCACGCAGC 1415755 Query 364724 ATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCC 364783 | ||| |||||| || || || |||||||| || || || | ||||||| Sbjct 1415754 ACGGTGTACGCAACAGTCTGCTTGTTGCCCCCATGCCTACTGCCAGCACCTCGCAGATCC 1415695 Query 364784 TCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTT 364843 | || |||| |||||||||||||||| || ||| | || ||||| || || Sbjct 1415694 TGGGCTACAATGAGTGCTTCGAACCGTACACCTCCAACATCTACCAGCGCCGTGTACTGG 1415635 Query 364844 CCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGT 364903 |||| || || | ||| || || | || |||||||||| ||| || |||| Sbjct 1415634 CCGGCGAGTTCCAGGTCGTCAACCCCTGGCTTCTCAAGGATCTGGTCGAGATGGGCCTGT 1415575 Query 364904 GGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAG 364963 || ||| |||||||||| ||||||||||| || |||||||| |||||||| || Sbjct 1415574 GGTCTGATGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCTGTTCAGAACATCCCGA 1415515 Query 364964 GATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC 365023 | || | || ||||| || | ||||| ||||| |||||||| || ||| || Sbjct 1415514 ACATCCCGGCCGAGGTGAAGGCTCTGTACAAGACCGTCTGGGAAATCTCTCAGCGGACCG 1415455 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 | || | ||||| || || || ||||| || ||| ||| ||||| | ||| | Sbjct 1415454 TTGTTCAGATGGCCGCAGACCGTGGTGCCTTCATCGACCAGTCGCAGTCCCTCAACATTC 1415395 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 ||||| | || ||| | |||| | || |||||| ||| ||| ||||| || Sbjct 1415394 ACATGAAGGACCCGACCATGGGCAAGATCACCAGCATGCACTTCGCCGGTTGGAAGCTCG 1415335 Query 365144 GTCTTAAGACAGG 365156 | || |||||||| Sbjct 1415334 GCCTGAAGACAGG 1415322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303344281836356