Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq400 111 1e-19 seq449 102 5e-17 seq380 89.7 3e-13 >seq400 Length=1139448 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG----GGTAATCTCGTT 25957 |||| |||||||||| |||| ||||| |||| ||| |||||||| || ||||||||| Sbjct 632925 AAGCACGTTCCCTTGACTGTAGTTTCCCTAGGTAGCAGATAGGGTNGTGGGAATCTCGTT 632866 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 632865 GATCCATTCATGCGCGTCACTAATTAGATGACGA 632832 >seq449 Length=641369 Score = 102 bits (112), Expect = 5e-17 Identities = 199/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| |||||||| ||| || | ||||| ||||||||||||| || Sbjct 166429 GGACGCTTTCTATCGCTACAAGATGGAAAAGCTCGTCACCAAGATCGAGGGTAAGGGCAA 166370 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 |||||| || ||||| | |||||| || |||||| || | || | ||||| | Sbjct 166369 CGGTATCAAGACCGTTGTCGTCAACCTGAGCAGCGTCGCTCAGTCTCTTGCTCGCCCCGG 166310 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||| | | || || ||||| | ||| || || || ||||| | | || | | Sbjct 166309 TGCCTTCATCATCAAGTACTTCGGTTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 166250 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 | || || | ||| | ||||| || || ||| | |||||||| |||||| || || Sbjct 166249 CGATGACCGTTGGATCATCAACGGTTCACACAACGCCGCCAAGCTTCAGGACCACCTCGA 166190 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| ||| |||||| || || || | | ||| | ||||| || ||||| Sbjct 166189 TGGCTTCATTAACAAGTTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAAACCGA 166136 >seq380 Length=739652 Score = 89.7 bits (98), Expect = 3e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | ||||||||||||||| || || || |||||| ||||| |||||||| | Sbjct 523393 TACCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGG 523334 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || | ||| || || || || || || || || || |||| || Sbjct 523333 ACAAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGG 523274 Query 38209 GGACGCCTTCTTTGTCC 38225 | | ||| || |||||| Sbjct 523273 GAATGCCCTCCTTGTCC 523257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944922149698