Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq449 102 9e-17 >seq449 Length=641369 Score = 102 bits (112), Expect = 9e-17 Identities = 195/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | ||||| || | ||||| |||| |||||||| || ||| Sbjct 272431 ATGTAGGTGTCGATAAGGAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 272490 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| || | || || | | || || ||| | || | ||| || || Sbjct 272491 AAGCCGTAGAAGCAACGGGCCTCTGGAACTTGGACCTCTCCACTGAAGCGCTCGACAAGG 272550 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || || ||||| || || || || || | || || || || | | Sbjct 272551 TTCTCGTTGACAATGCCGTCGGAAGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTAT 272610 Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||||||||| || | | || | ||| ||| || || || || ||||| | || Sbjct 272611 TTCTCATCATCATTGATCTTGTTGTTCCAGTCGTGGAGGTCCTTGGACAGATCAATCTCC 272670 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| ||||||| || || || || || || |||||||| | ||| || Sbjct 272671 TCGGCAGTCCAGAAAGAGGCCTCAGCCTTCTTGTACATTTGCCAGAT 272717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856915895920