Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq547 123 2e-23 seq380 123 2e-23 seq487 86.0 5e-12 >seq547 Length=620828 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| ||||| ||||| | || Sbjct 191587 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 191528 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 191527 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 191468 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| ||||||| ||||||| |||||| Sbjct 191467 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 191408 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || | || |||| |||| || ||| Sbjct 191407 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTGCGTCTGCGTGGTGGT 191360 >seq380 Length=739652 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || ||| | || | || || || | | Sbjct 523621 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGTCA 523680 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || |||||||||||||||||||| || ||||| || Sbjct 523681 GACACGATTGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCAG 523740 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || ||||| |||||| |||||| | ||| |||||| Sbjct 523741 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACAAC 523800 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| ||| | ||| | ||| | || || || || ||| Sbjct 523801 ATTCAGAAGGAATCAACCCTCCATCTTGTTCTCCGTTTACGTGGCGGT 523848 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22241 TAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAAC 22300 ||||||| || || ||||||| || || || || |||| ||| | ||| || |||| Sbjct 522907 TAACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGT 522966 Query 22301 AAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCA 22360 || || || ||||||||||| ||||| ||||| || || || || || || || |||| Sbjct 522967 CCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCA 523026 Query 22361 AACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATAC 22420 | ||| | |||||| ||| || ||||||| ||||||||||| || || ||||| | | Sbjct 523027 AGCAGCTCGAGGATGGCCGTACGCTCTCCGACTACAACATTCAGAAGGAGTCCACTCTTC 523086 Query 22421 ATTTAGTTTTGCGATTGCGCGGAGG 22445 | || ||| | || | ||||| || Sbjct 523087 ACTTGGTTCTCCGTCTCCGCGGTGG 523111 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || | || ||||| || || | | |||||| | ||| | |||| Sbjct 523189 ACCGGCAAGACCATTACCCTTGAGGTAGAGTCATCTGATACCATCGACAACGTCAAGTCC 523248 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| ||||| || || || || || || || ||||| Sbjct 523249 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGGCTGATTTTCGCTGGCAAG 523308 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| || || | ||||||||||||||||| || || || || | || Sbjct 523309 CAACTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCTACGCTCCAC 523368 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| |||||||||||| Sbjct 523369 TTGGTGTTGCGTTTGCGCGGAGGT 523392 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| ||||| || || | | Sbjct 523393 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTTCA 523452 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || ||||| || |||||||||||||| ||||| || Sbjct 523453 GATACGATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAG 523512 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || || || |||||| || || | ||||| |||||| Sbjct 523513 CAGCGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACAAC 523572 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | ||| | || | || | || |||||| Sbjct 523573 ATCCAGAAGGAATCAACCCTTCATCTCGTCCTCCGCCTCCGTGGAGGT 523620 >seq487 Length=725459 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| ||||| || || || | || || | Sbjct 202618 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACGAT 202677 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || || || || || | Sbjct 202678 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTT 202737 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | ||||| ||||||| | ||||| |||||||| || || Sbjct 202738 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAA 202797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725145587270