Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq550 116 8e-21 seq367 91.5 3e-13 seq449 86.0 1e-11 >seq550 Length=507566 Score = 116 bits (128), Expect = 8e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| ||| || || ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 338596 CTCCCGTATTGCTGTTATCGGTCCCAACGGTGCCGGCAAGTCTACCCTCATCAACGTCCT 338655 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | |||| ||||| | | |||| ||||| || || || Sbjct 338656 CACTGGTGAGCTCGTCCCCACCGAGGGTGAGATCTACCAGCACGAGAACATCCGCATTGC 338715 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||||||| |||||||| |||| || || | | Sbjct 338716 CTACATCAAGCAGCACGCTTTCGCCCACATCGACAACCACCTCGACAGCACCCCCTCCGA 338775 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCGC 280391 ||||| |||||||| | | || | ||| |||||| ||| || |||| ||| Sbjct 338776 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCGC 338827 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| ||||| || || ||| Sbjct 337781 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTTCTCAAC 337840 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 337841 CAGACCCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 337900 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 337901 GGCAAGTCCACTCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 337959 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 337960 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 338005 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||||||||| || ||||| ||||| || ||| || || ||||| | | || || Sbjct 339185 CACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTTAAGGTTGTCCTTGCTGCCTGC 339244 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||||| || ||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 339245 TCT-TGGCAACGTCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGTGA 339303 >seq367 Length=1930334 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || ||||| |||||||||||||||||| | |||| ||||| || | Sbjct 1722124 GTCGGCTCTCTCTCCGGTGGATGGAAGATGAAGCTGGCCTTAGCTCGAGCCATGCTCAAG 1722183 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||| ||||| ||||| || || || || |||||| |||| ||||| | || Sbjct 1722184 GGTGCCGACGTCCTGCTGCTGGACGAACCTACTAACCACTTGGATGTTGCCAACATTGCA 1722243 Query 279816 TGGCTAGTGTCCTACCT---AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||| | | | |||||| ||| | | ||| | | | | || || |||||| Sbjct 1722244 TGGTTGGAGAACTACCTCAAGACCCACCCGGAGA---TCACCAGCTTGATCGTTTCTCAC 1722300 Query 279873 GACTCTGGCTTCCTAGA 279889 ||||| |||||||| || Sbjct 1722301 GACTCCGGCTTCCTTGA 1722317 >seq449 Length=641369 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582 ||||| ||||| || | | || || || | ||||| |||||||| || | |||||| Sbjct 271798 TTCATGACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCC 271856 Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642 | || ||||| ||||||||||||||||||||| || | ||||| |||| | Sbjct 271857 TCCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTT 271916 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATC-AGTTCAG 251701 ||| || || || | | ||||| || || ||||| | ||||| |||| ||||| | Sbjct 271917 GCCCAGGGCAACAAGCAGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTC-G 271975 Query 251702 AGTTCATGCC 251711 |||||||||| Sbjct 271976 AGTTCATGCC 271985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829451609278