Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq547 163 5e-35 seq380 158 2e-33 seq449 129 1e-24 seq550 122 2e-22 seq423 111 3e-19 seq367 107 4e-18 >seq547 Length=620828 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | ||| || |||||||| || |||||||| || |||||| Sbjct 191361 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 191420 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || |||||||| || Sbjct 191421 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 191480 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 191481 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 191540 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||| ||||| |||||||| || Sbjct 191541 TCAAGGGTGATAGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCATGAT 191590 >seq380 Length=739652 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | || | || || || || || || |||||||| || ||||| Sbjct 523619 CCTCCACGGAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 523560 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || || ||||| |||||||| || | || || |||||||| ||| Sbjct 523559 AGAGTACGACCATCCTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGA 523500 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | |||||| ||||| || |||| || || || Sbjct 523499 ATACCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATCGTATCTGAAGACTCAACC 523440 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || ||||||||||||||||| |||||||| Sbjct 523439 TCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 523393 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || |||||||| || || ||||| || |||||| Sbjct 523111 CCACCGCGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 523052 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || |||||||| ||| Sbjct 523051 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGA 522992 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 522991 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 522932 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 522931 TCGAGAGTGATGGTCTTGCCGGT 522909 Score = 132 bits (146), Expect = 9e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || || || || ||||| || ||| || || | ||||| || | Sbjct 523828 CAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCA 523769 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||||| || || || || || | ||| |||||||| || || || ||||||||||||| Sbjct 523768 ACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAA 523709 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | ||| ||| || || ||||||| || || || ||||| || || || || | Sbjct 523708 TCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGC 523649 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| ||||||||||| || ||||| Sbjct 523648 CAGTGAGAGTCTTGACGAAGATTTGCAT 523621 >seq449 Length=641369 Score = 129 bits (142), Expect = 1e-24 Identities = 276/406 (68%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || |||||||||||||| |||||| Sbjct 271798 TTCATGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCT 271857 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTT-CTCGGC-GCCAAACTGCTTGGGGT 10050 ||||||| ||| |||||||||||| |||||||| | | | | || |||| || Sbjct 271858 CCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGACTTGTAGAC--CTTGTTGT 271915 Query 10051 AACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCG 10110 || || || | | ||||| || ||||||||||||||||| |||||| || || Sbjct 271916 TGCCCAGGGCAACAAGCAGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCG 271975 Query 10111 AGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGA 10170 |||||||||| | | |||||| | || ||| | ||| |||| || | || Sbjct 271976 AGTTCATGCCGAGAAGAGCGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGA 272035 Query 10171 CCGCTTCCTCGACGATGCTCTTTACCACGT-CAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 | || || | | ||| || | || | | | | || ||||| ||| | ||| Sbjct 272036 CAGCGTCGACAATAATGTCCTCAATGACCTGCTTGCTAGGGC-GGTTCTTGAGGTGAGAA 272094 Query 10230 TACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGAC 10289 ||| ||| | || | |||||| |||||||| || ||| | |||||| || Sbjct 272095 AACAAGAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAG 272154 Query 10290 AAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG 10335 || ||||||||||||||| || || || ||||||||| |||| Sbjct 272155 AATGTCAGACCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGG 272200 >seq550 Length=507566 Score = 122 bits (134), Expect = 2e-22 Identities = 670/1046 (64%), Gaps = 58/1046 (6%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | |||||| |||| |||||||| || || ||| |||||| Sbjct 338790 CGCCACTGGATGTACTCGGAGGGGGTGCTGTCGAGGTGGTTGTCGATGTGGGCGAAAGCG 338731 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || ||||| ||||| |||| | | | | || || || Sbjct 338730 TGCTGCTTGATGTAGGCAATGCGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTGGGG 338671 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | || || || |||||||| |||||||| |||| |||||| ||||| ||||| || || Sbjct 338670 ACGAGC-TCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCGAT 338612 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG- 225216 || |||| ||||| || | ||| ||| || | || | ||| ||| || Sbjct 338611 AACAGCAATACGGGAGCCGAGAGAGCA--CTGGAAGGAAATGTCGGTGA---TCTGGGGC 338557 Query 225217 --GCCAGTTT---GGTAAGCAAAGGCCAC---GC---CACGCAGCTTCATGATGGCACGG 225265 || || |||| |||| || || |||| || |||||| | Sbjct 338556 TTGCTGGTACCGGGGTACTGGAAGGACATCTTGCTAGCACGGAG------GATGGCCTTG 338503 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||||||||| ||| || | | Sbjct 338502 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAAGAGAACTCCATCTCGGAA 338443 Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 | || |||||||| || |||| ||| ||| ||||| |||||||||| Sbjct 338442 GCGCCAAGCTCGTAGTAGGACTTGGCCTGGGGGTTCTTCTTGACGAACTCAGACAGGTTA 338383 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || ||| | | ||||||| | || |||| || | || ||| | ||| || Sbjct 338382 CCACGGTAGCGCTTAAGCTTGAAGCGCT---CGTAGTGGATGATGTGCTG-GCAGACGTT 338327 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503 ||| ||||| ||| ||||||||| || |||||||| | || | | ||| | |||| Sbjct 338326 GTCGAGGAAACCACTGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGGTC-TTGA 338271 Query 225504 GGTGCGTGATGA-GCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 ||| || | | |||| ||||| | ||||||| |||||| ||||| ||||| || Sbjct 338270 GGTA-GTCCTCAAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTCGAGG 338212 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || || || || | | | || || || || |||| |||||||| ||||| || Sbjct 338211 AGGAGAATATCGGGAGCCTCGAAGACAGCACGGCACAGAGCGAGCTTCATCTTCCAACCA 338152 Query 225623 CCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTC-GTCAAAGCCGTACTCCAGGAG 225681 || || |||| ||| | | | | | || || ||| ||| |||| ||| Sbjct 338151 CCAGAAAGGGCAGAGATCTCACCCTTGACCATCTGGTCAGTGAAA-CCGAACTCGTTGAG 338093 Query 225682 CGT---CTGGATAATGCGCTCGGGAGAGCTG---CGAGCG---GCAACGTTGGGGTCGGA 225732 | | || || | || || || | | | |||| |||| || || Sbjct 338092 CTTGGCCTCGACGTCGGCCTGGGTAGTGTCGACACCAGCGTCGGCAAGCTTCTTCATGGT 338033 Query 225733 CGAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792 | | | || | |||||| || | | ||| | ||||| |||||| || ||| | Sbjct 338032 CCACTCG--ATGGT----GGTCATCTCAGTGTCAGCGGAGTCAAGGTCGTGCTCGACGAA 337979 Query 225793 CACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCAC 225851 || ||| || || | || | |||||| ||||| | ||| | || || |||| Sbjct 337978 GACAGTCTTGACCTCGCTCTGCTT-GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCAC 337920 Query 225852 GGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCT 225911 | | || || |||||| | |||||||||||| || ||||| | | || |||| Sbjct 337919 GCATGAGAGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCT 337860 Query 225912 TGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGC 225971 ||| |||| | || ||| || ||||||||| |||| ||||| |||||||| || Sbjct 337859 TGAGACGGAGGTGGGTCTGGTTGAGAAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGC 337800 Query 225972 AATCGCACAGGTCCTCACCCTCCTCG 225997 | | ||| |||||||||||||||||| Sbjct 337799 AGTTGCAAAGGTCCTCACCCTCCTCG 337774 >seq423 Length=843791 Score = 111 bits (122), Expect = 3e-19 Identities = 216/316 (68%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||||||||||||| ||| |||||||| || || || |||| ||| || | | Sbjct 381291 CCGGTGTGGACGTCCTCGGAGAAACCAATCTCTGCGGTTCCACCGACCTCTACGAGAGAC 381232 Query 59357 TCTCGGCGGTAGACTGCGCATGTC--CCGACGCACACGGCGCCGCCAAAGGTGTCGCGAG 59414 || || ||||| | |||||| | || ||||| | | |||| | ||| ||| Sbjct 381231 TCGCGACGGTACA--GCGCATTGCTTCCAACGCAGATAGAAGCGCCCCATCTGTTGCGGT 381174 Query 59415 AAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAG 59474 ||||| | | |||||||||||| || || | |||||| | |||| ||||||| Sbjct 381173 TGACCTGAACAACACGGTAGAACAGCTCTTGCGTCGCGCCAGCACCCTGCTCCACCCAAG 381114 Query 59475 TCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534 |||||||| | || |||| |||| || |||| |||| || |||| |||| Sbjct 381113 TCTGGTCGTCGGTGACGCGGAAGTACTGAGGACTCTGGACAAGAGCCGTCTTCTCGTC-- 381056 Query 59535 GGGAAAAGTAGGGC---ATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591 | |||| | |||| |||||||| | | ||||| || || ||||| || || | Sbjct 381055 -GCCCAAGTGCTCCACGATGAGTTCCTTGACGAAATCAGGACGGGGGCAGAAATCGGCGT 380997 Query 59592 CGAAGATGGCAAAGAA 59607 |||| |||||||| || Sbjct 380996 CGAAAATGGCAAAAAA 380981 >seq367 Length=1930334 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 |||||||||||| |||||||| || || || | | | | | || || |||||| Sbjct 1722318 GTCAAGGAAGCCGGAGTCGTGAGAAACGATCAAGCTGGTGATCTCCGGGTGGGTCTTGAG 1722259 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | | |||||| | |||| || |||| |||||| |||||||||||||| || Sbjct 1722258 GTAGTTCTCCAACCATGCAATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAGCAG 1722199 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||||| ||| ||| | |||| ||||| || | | | ||||||||| ||||| || || Sbjct 1722198 CAGGACGTCGGCACCCTTGAGCATGGCTCGAGCTAAGGCCAGCTTCATCTTCCATCCACC 1722139 Query 225625 GGACAGGGAGCCGA 225638 ||| || ||||||| Sbjct 1722138 GGAGAGAGAGCCGA 1722125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921615971683760