Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq516 419 4e-112 seq449 237 3e-57 >seq516 Length=1641395 Score = 419 bits (464), Expect = 4e-112 Identities = 1148/1739 (66%), Gaps = 61/1739 (4%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGA--GG 243934 |||||||||||| |||||||| ||||| | || ||||||||||| ||| | || Sbjct 1415399 GTTGAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCTGCGGCCATC-TGAACAACGG 1415457 Query 243935 TCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCT 243994 ||| |||||| || || | | |||||||| | | ||| | | | |||| | Sbjct 1415458 TCCG-CTGAGAGATTTCCCAGACGGTCTTGTACAGAGCCTTCACCTCGGCCGGGATG--T 1415514 Query 243995 TCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCC 244052 ||| |||||||| || || || || | | |||||| || | |||| ||| || Sbjct 1415515 TCGGGATGTTCTGAACAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCAGACC 1415574 Query 244053 ACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCACCACCTGAAACTCT 244108 ||||||||| |||| ||| || ||||| | || || ||||| ||||| Sbjct 1415575 ACAGGCCCATCTCGACCAGATCCTTGAGAAGCCAGGGG----TTGACGACCTGGAACTCG 1415630 Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168 || | ||| || ||||||||||||| |||| | || ||| |||| || ||| ||| | Sbjct 1415631 CCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAG 1415690 Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228 ||||| ||||||| ||||| ||||| |||||||| | || ||||||||||| | || Sbjct 1415691 CCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACA 1415750 Query 244229 CCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCG 244288 |||||| | ||| | | ||| || ||||||||| | | | || || Sbjct 1415751 CCGTGCTGCGTGATCTGCTCCTTCAGCGAGTCCCAGTCCCATAAGTCGGA--------CG 1415802 Query 244289 CGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAG 244348 | || | |||||||||||| |||| ||| |||||| || || |||||||| Sbjct 1415803 -GCTTCACTCCCCACATGTCATACTGGAGCTCGCCCTTGGAGATAGGCGAACCCTCGTAA 1415861 Query 244349 GTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTA 244407 | | ||||| ||| || || |||||||| || | | ||| || || |||| ||| Sbjct 1415862 GACTCGTAGGTACCCTCCTCCTTGGCCAGCTGCACCGACATGGTC-AGAGCAGCGTGGTA 1415920 Query 244408 GATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC 244467 |||||||||||||||| | || || | ||||| |||| | | |||||| | | Sbjct 1415921 GATGGTCTCGAAGATCTTTTTATTAAGATCGCGAGCCTCAGGGGACTCGAAGGGCAGACG 1415980 Query 244468 CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTT 244527 || || ||| | || || || || || || || | |||||| || | ||| ||| | Sbjct 1415981 CAGAGCCAAGAAAGCATCAGCAAGACCTTGGACACCAAGGCCGATAGGGCGGTGACGCAT 1416040 Query 244528 GTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTT 244587 |||| | || || || || ||||| |||| | || || | | |||| ||||| Sbjct 1416041 GTTGCTGTTACGAGCCTCCGGAACAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTT 1416100 Query 244588 GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTC 244647 ||| | | || | || ||| ||| |||||||| | | ||| Sbjct 1416101 GCGTACAACAACCTGGGTGGTCTCATGGAGCTTCTGGAAGTCGTATGC------ACTCTC 1416154 Query 244648 GGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCAC 244707 | | || || ||||| | ||||||| ||||| |||||| || || || Sbjct 1416155 G----TTGTAGTCG--ACAAATGCAGGCAGGGCGAGCGAGGCCAAGTTGCAAACAGCGAC 1416208 Query 244708 CTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTG---ATGGT 244764 ||| || | | ||||| | ||||| ||||| || || | | ||| ||||| Sbjct 1416209 CTCGTCAGGCGCGCAGTACTCAATGATCTCAGTGCACAGATT---GGAATTGCGGATGGT 1416265 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 || |||| || || ||| |||| |||| | ||||| || |||||||| || Sbjct 1416266 ACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGATCCTTATAAAGCATGAACGGGTT 1416325 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 || |||||| ||| || |||| | | | |||||| | |||||| | ||| | Sbjct 1416326 ACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCAGAGCTTTTGAGCCTTTAGGGTCTT 1416385 Query 244885 GCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGAC 244944 ||| |||||||||| |||||| |||| |||||| ||||| ||| || Sbjct 1416386 GCGGCCCTTGCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCA 1416445 Query 244945 CTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGA 245003 ||| | |||||||||||| || ||| |||||||| |||||||||| | | | Sbjct 1416446 GTCGGCAAGGCCGGGGCAC-TCGTTGGGACACATGAGCGTCCACTCGCCATTCTTTTCCA 1416504 Query 245004 CCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCT 245063 |||||| ||||||||| ||||| ||||||||||| ||||||| || | || | || Sbjct 1416505 CCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGGCACGAACCT 1416564 Query 245064 CGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCT 245123 | || ||| |||||| | || ||||| || || || || ||| |||||||||||| Sbjct 1416565 CCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGAAAACATCGGCGTGCCAGGGCT 1416624 Query 245124 CCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGA 245183 | | |||| |||| ||||||||| ||||||||||| |||||||| | | | ||| Sbjct 1416625 CGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGA----CGTAGCGA 1416680 Query 245184 GCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCC 245239 ||| |||||| | || || | || | | ||||| ||| ||| |||||||| Sbjct 1416681 GCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGAGGTGCCATTGGTGCCG 1416740 Query 245240 TTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGC 245299 |||||| | ||| | | | | | | || | |||||| | ||||| || | Sbjct 1416741 GCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGCCAGCCATC 1416800 Query 245300 TTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTC 245359 || ||||| | ||| || |||||| ||||| ||||| || ||| |||| |||| Sbjct 1416801 TTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTC 1416860 Query 245360 ATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTG 245419 |||| || || ||||| || ||||| || | || |||| | | | ||||||||| ||| Sbjct 1416861 ATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTG 1416920 Query 245420 GGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGA-GCAGAGCGTC 245478 || ||||||||| || | ||| || | || ||| |||| || | | || || Sbjct 1416921 GGAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGTTGTAGGTCTCGATGACGCGC-TC 1416979 Query 245479 GATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGAT 245538 | |||||| || ||| | || | ||||| |||||||||| ||||| Sbjct 1416980 AACGTTGTCCCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCG-- 1417037 Query 245539 GGGTCCCTCGGGTCC--CTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | | | || |||| |||||| | ||| || | ||| || |||||||| |||||||| Sbjct 1417038 GCGATCTTCCCGTCCAGCTTGAGGAGGTATGACCTCTCAAGGGTCTTGAAGCCAAAGTA 1417096 >seq449 Length=641369 Score = 237 bits (262), Expect = 3e-57 Identities = 371/520 (71%), Gaps = 17/520 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 |||||||| |||||||| |||||||| ||||| |||||| | || || | | || Sbjct 272324 CCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCC-GACCAGAAGTCCAC 272266 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | || | || || |||||| | ||||| ||||| |||||||| || ||||| Sbjct 272265 CTTTGCCCAGCGTCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCTT 272206 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||||||||| ||| || ||| || |||||||| || || ||||| |||| Sbjct 272205 CGCTTCCATCTTCTGGCTGAAGAAGCGCGGTCTC-ATGCCCGGTCTGACATTCTCTAACG 272147 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | || ||| | |||||||| || || | ||||| ||||||||| |||| || | Sbjct 272146 AGCTTATCTCTCGTGACGAGGGTCTCCACACCGACTTCGCCTGCCTCTTGTTTTC---TC 272090 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGG 42927 |||||| | || ||||| | | ||| |||| || ||| || || || || Sbjct 272089 ACCTCAAGAAC-CGCCCTAGCA--AGCAGGTCATTGAGGACATTATTGTCGACGCTGTCA 272033 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987 |||| ||| |||||||| | || || | |||||| | || ||||||||||| Sbjct 272032 AGATTGAGCAGGAGTTCTTGACCGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCGA 271973 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCT 43045 || | ||| |||||||| ||| ||| || |||| ||| || |||| |||| Sbjct 271972 ACTTGATGAAGCAGTACATCGAGTTCGTTGCGGACCGTCTGCTTGTTGCC--CTGGGCAA 271915 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 || | ||||||| | | |||||||||||| |||||||||||||| | | || Sbjct 271914 CAACAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGAGG 271855 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||| ||||||||||| || |||||||||||| Sbjct 271854 CAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAG 271815 Score = 145 bits (160), Expect = 1e-29 Identities = 235/333 (71%), Gaps = 5/333 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| ||| Sbjct 272717 ATCTGGCAAATGTACAAGAAGGCTGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTG 272658 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTC--TGAGAACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||| | || || ||| | || || | ||| || Sbjct 272657 TCCAAGGACCTCCACGACTGGAACAACAAGATCAATGATGATGAGAAATACTTCATCTCT 272598 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || |||||||| ||||| |||||||| | | | Sbjct 272597 CACATTCTTGCCTTCTTCGCCGCTTCCGACGGCATTGTCAACGAGAACCTTGTCGAGCGC 272538 Query 42477 TTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| |||||| || || | ||||| || |||||||||||||||||||| || Sbjct 272537 TTCAGTGGAGAGGTCCAAGTTCCA-GAGGCCCGTTGCTTCTACGGCTTCCAGATCATGAT 272479 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||||||| ||| | || || |||| |||||| ||| |||| Sbjct 272478 GGAGAACATCCACTCTGAGACCTACTCTCTCCTTATCGACACCTACATCAAGGAGCCCGC 272419 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | |||| | | || ||||| ||||| || || Sbjct 272418 CCAGCGCACCTACCTCTTCAATGCCATTGACAC 272386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332613234080