Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq380 118 3e-21 seq537 93.3 1e-13 >seq380 Length=739652 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || |||||||||| || ||| || ||||| || ||||||| Sbjct 523619 CCTCCACGGAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 523560 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || ||||| ||||| |||||||||| ||||| || || ||| Sbjct 523559 AGAGTACGACCATCCTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGG---TCGGGG 523503 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || |||||||| || || | || || || || || | ||| || || Sbjct 523502 GGAATACCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATCGTATCTGAAGACTCA 523443 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 523442 ACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 523393 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || |||||| || ||||| || || || || || || || || || Sbjct 523812 TTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAA 523753 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| || || ||||| || || || || || || || | |||||||| Sbjct 523752 GATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAATCTTGGACTTCACGTT 523693 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || ||| || || || | ||| |||||||| || || ||||||||||| Sbjct 523692 GTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGAC 523633 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 523632 GAAGATTTGCAT 523621 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || || | |||| ||| || || || || || |||| Sbjct 523115 CATG-CCACCGCGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGT 523057 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| |||||| || || || || | || || || ||||| ||||| ||||| || Sbjct 523056 CGGAGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGG 522997 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || |||||||| || | || || || || || | ||| || | Sbjct 522996 GAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACT 522937 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGT 288449 | || ||||| ||||| ||||| ||||| Sbjct 522936 CGACCTCGAGAGTGATGGTCTTGCCGGT 522909 >seq537 Length=1778172 Score = 93.3 bits (102), Expect = 1e-13 Identities = 204/292 (70%), Gaps = 14/292 (5%) Strand=Plus/Plus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 ||||| || |||||||||| | ||||| | ||||||| || | | ||||| || | Sbjct 1195082 ACGATTGGGGTGATGAACTCCCGGAAGAAGTCCGGAATTTGCAGTAAAG-AGGGATACTG 1195140 Query 326024 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 326081 || || || ||||| |||| ||||| || ||| | ||||| |||| |||| Sbjct 1195141 GACT-TGTAAGAAGTTGATGAGTAGACCCTTGATATGACTACCGTCGTGATCCTGATCGG 1195199 Query 326082 TCATGATCATCACATGACCGTAACG-AAGCGAGGACGTGTCTTTGTACACTTTACCG-GT 326139 ||||||||||| ||||| || || |||| ||||| |||| | | | | Sbjct 1195200 CCATGATCATCAGGTGACCATACCGCAAGC-CCTTGGTGTCGGTGTAGGTTGTCTTGTGC 1195258 Query 326140 TTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG--C 326196 ||| || ||||| | || |||| | ||| |||||||| ||| |||||||| ||| | Sbjct 1195259 TTG-AGACCGAGGAACTGCTTGATGTTCTG-GATTTCTTGGTTTTTCGTGAT--TTGGTC 1195314 Query 326197 CACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCA 326248 | |||||||| |||||||||| | || ||||||||||| || |||||| Sbjct 1195315 AATCGATGCATCTCGGACGTTCAGCATCTTACCACGAAGAGGAAAGACTCCA 1195366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179645966208324