Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq449 91.5 3e-13 seq537 89.7 1e-12 >seq449 Length=641369 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC-ATG 243588 |||| ||| | ||| ||| | || ||| ||| | ||||||||||| ||||| ||| Sbjct 272023 AGGAGTTCTTGACCGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTC-GAACTTGATG 271965 Query 243589 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTG 243648 ||||||||||| ||||| || ||||| | | | || || || | | || || Sbjct 271964 AAGCAGTACATCGAGTTCGTTGCGGACCGTCTGCTTGTTGCCCTGGGCAACAACAAGGTC 271905 Query 243649 TACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAAC 243708 ||||| || | |||||||| | ||| |||||| ||| || || ||| || || ||| Sbjct 271904 TACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGAGGCAAGACCAAC 271845 Query 243709 TTCTTCGAAAAGCGTGT 243725 |||||||| |||||||| Sbjct 271844 TTCTTCGAGAAGCGTGT 271828 >seq537 Length=1778172 Score = 89.7 bits (98), Expect = 1e-12 Identities = 203/292 (70%), Gaps = 14/292 (5%) Strand=Plus/Plus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 ||||| || |||||||||| | ||||| | ||||||| || | | ||||| || | Sbjct 1195082 ACGATTGGGGTGATGAACTCCCGGAAGAAGTCCGGAATTTGCAGTAAAG-AGGGATACTG 1195140 Query 298145 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 298202 || || || ||||| |||| ||||| || ||| | ||||| |||| |||| Sbjct 1195141 GACT-TGTAAGAAGTTGATGAGTAGACCCTTGATATGACTACCGTCGTGATCCTGATCGG 1195199 Query 298203 TCATGATCATCACATGACCGTAACG-AAGCGAGGACGTGTCTTTGTACACTTTACCG-GT 298260 ||||||||||| ||||| || || |||| ||||| |||| | | | | Sbjct 1195200 CCATGATCATCAGGTGACCATACCGCAAGC-CCTTGGTGTCGGTGTAGGTTGTCTTGTGC 1195258 Query 298261 TTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG--C 298317 ||| || ||||| | || |||| | ||| |||||||| ||| |||||||| ||| | Sbjct 1195259 TTG-AGACCGAGGAACTGCTTGATGTTCTG-GATTTCTTGGTTTTTCGTGAT--TTGGTC 1195314 Query 298318 CACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCA 298369 | |||||||| ||||| |||| | || ||||||||||| || |||||| Sbjct 1195315 AATCGATGCATCTCGGACGTTCAGCATCTTACCACGAAGAGGAAAGACTCCA 1195366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102872115097300