Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq516 212 7e-50 seq449 122 1e-22 >seq516 Length=1641395 Score = 212 bits (234), Expect = 7e-50 Identities = 945/1473 (64%), Gaps = 59/1473 (4%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| ||||| || || ||||||||||||| |||| ||| || | |||| | Sbjct 1415652 TAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTG 1415711 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || || |||||||| || | || || ||||| || | ||| | | | | || | ||| Sbjct 1415712 GCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCTCC 1415771 Query 114062 TTGAGGGCGTCCCAGTC---GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 114118 || || | ||||||||| ||| | | | || | | |||||| ||| ||||| Sbjct 1415772 TTCAGCGAGTCCCAGTCCCATAAGTCGGAC---GGCTTCACTCCCCACATGTCATACTGG 1415828 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCC 114178 || || | |||| ||||| ||||| | | |||||| | ||||| ||| ||| Sbjct 1415829 AGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCC 1415888 Query 114179 AATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 | | | || | | | || || ||||| || || ||||| || || ||| Sbjct 1415889 AGCTGCACCGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTA 1415945 Query 114236 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA--AAATAAATACATCCGCGA 114293 | | ||||| ||| || || | || | ||| | || ||| |||| || | Sbjct 1415946 AGATCGCGAGCCTCAGGGGACTCGAAGGGCAGAC-GCAGAGCCAAGAAA-GCATCAGCAA 1416003 Query 114294 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC- 114352 ||||||||||||| ||||| || ||||| || | ||| || || ||||| |||| Sbjct 1416004 GACCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTTGCTGTTACGAGC---CTCCG 1416060 Query 114353 --ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410 || || || || ||| || | ||| || || || ||||||| ||| Sbjct 1416061 GAACAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGG 1416120 Query 114411 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC---TTCATTGACATACTTAGGAA 114467 | ||||| ||||| | | | || | ||| | |||| | | |||| | ||| | Sbjct 1416121 TCTCATGGAGCTTCTGGAAGTCGTA--TGC-ACTCTCGTTGTAGTCGACAAATGCAGGCA 1416177 Query 114468 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 114527 |||||| || |||| || || |||| | ||| || | |||||| || || | Sbjct 1416178 GGGCGAGCGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCT 1416237 Query 114528 CCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 114587 | || |||| ||| ||| | ||||| || | |||||| || || ||| ||| Sbjct 1416238 CAGTGCACAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGG 1416297 Query 114588 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 114647 |||||| ||||||||| | || | || ||||| || || | || |||||| || | Sbjct 1416298 CGTGATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCAT 1416357 Query 114648 TCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTAC 114700 ||||| | | | | || || || ||| || |||| |||| ||||||| Sbjct 1416358 ACCAGAGCTTTTGAGCCT---TTAG-GGTCTTG---CGGCCCTTGCCCTCGCGCTCGTAC 1416410 Query 114701 TTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 114760 || || | ||| ||||||||||| || | || | || || || || | Sbjct 1416411 TTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTG 1416470 Query 114761 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATC 114820 || || | ||| | ||| | ||| || || || | |||||||||||| || || ||| Sbjct 1416471 GGACACATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATC 1416530 Query 114821 CAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 114880 ||||| || ||||||||| || ||| | || || | || || || || | Sbjct 1416531 CAGAGGGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGA 1416590 Query 114881 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---- 114936 ||||| || || | | ||| |||||||| || || || || | |||| | || Sbjct 1416591 TCCAAGAACTCGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGG 1416650 Query 114937 --CTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATT 114994 ||| | | ||| |||||| || || | || ||| || || || |||||||| Sbjct 1416651 CGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATG 1416707 Query 114995 GGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGA 115052 || |||| ||| | || |||||| || || ||| |||||| | | | || | | Sbjct 1416708 GGGATGACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCC--AGTAGCGCGAA 1416765 Query 115053 CATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 115112 |||| || ||| ||||| || || ||| ||||||||| || ||| | ||| Sbjct 1416766 TGCGGTGGACGTTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGA 1416825 Query 115113 GACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACA 115172 || || ||||||| || ||||| ||||| |||| | ||| ||||||||| |||| Sbjct 1416826 GAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACA 1416885 Query 115173 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT 115232 ||| | | || ||||| |||||||| || || || | |||||| ||| | | ||| Sbjct 1416886 GTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGA--AAAACTT 1416943 Query 115233 G--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 115290 | |||||| | ||||||||| | |||| || || ||||| ||||||| Sbjct 1416944 GCTTGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGAC 1417003 Query 115291 CGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAG 115350 | || ||||| | ||||| |||||| | || | | || || ||| | |||| Sbjct 1417004 AGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCCAGCTTGAGGAG 1417063 Query 115351 GTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 ||| | |||| | |||||||| ||||| || Sbjct 1417064 GTATGACCTCTCAAGGGTCTTGAAGCCAAAGTA 1417096 >seq449 Length=641369 Score = 122 bits (134), Expect = 1e-22 Identities = 304/458 (66%), Gaps = 18/458 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 271818 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCAT 271877 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCC----CAATCTGTTTGAG 125871 || || || ||||| | || || | | |||||| ||| ||| || Sbjct 271878 GAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGGGCAACA------AG 271931 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| |||| ||| |||| ||||||| |||| | |||||||| |||| || Sbjct 271932 CAGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGAAG 271991 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 || || || || || | |||| ||| |||||| | || || || | || Sbjct 271992 AGCGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATAAT 272051 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGC 126048 | | | |||| | | | ||| | | ||| | || ||||| || ||| Sbjct 272052 GTCCTCAATGACCTGCTTGCTAGGGCGGTTCTTGAGGTGAGAAAACAAGAGG--CA-GGC 272108 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || |||||||||||||||||| ||||| || || || ||||| ||| || || Sbjct 272109 GAAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGG 272168 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 ||||||||| |||||||||| |||||| || | | || | ||| |||||||| || Sbjct 272169 CATGAGACCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACC 272228 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 ||| || || || |||| ||||||| ||||||| Sbjct 272229 CTCAACGGCAGCAAAGGCAACTAGACGCTGGGCAAAGG 272266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349433458640