Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq380 109 6e-19 seq547 98.7 1e-15 seq487 84.2 2e-11 >seq380 Length=739652 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | |||||||||||||| || | || |||||| ||||| |||||||| | Sbjct 523392 ACCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGA 523333 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || || ||||| |||||||| || || ||||||||||||| || Sbjct 523332 CAAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGG 523273 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| || |||| ||| | | | || || || || | Sbjct 523272 AATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCAGATGACTCTA 523214 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || | || ||||| ||||| || || ||||| || Sbjct 523213 CCTCAAGGGTAATGGTCTTGCCGGTGAGTGTCTTGAC 523177 Score = 102 bits (112), Expect = 9e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| |||| || | |||||| | || | ||| | || ||||| ||||| ||||| Sbjct 523854 TTATTGACCGCCACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTA 523795 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || |||||| || | || || | |||||||||||| || || || || |||||||| Sbjct 523794 GTCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTC 523735 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 42153 || || | | |||||||| | ||| | || | | ||| | | | |||||| || Sbjct 523734 GGGGGGGATACCCTCCTTGT-CTTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACG 523676 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || | ||| || || ||||| || || ||||| || ||||||||||| Sbjct 523675 ACTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| ||||| ||||| || | || || || | || || Sbjct 523093 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCCTCG 523034 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || || ||||||||||||| || | || |||||||||| | Sbjct 523033 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGG 522974 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| | | | |||||| || || || |||| |||||||| ||| Sbjct 522973 ATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTG 522914 Query 42180 CCCGTTA 42186 || |||| Sbjct 522913 CCGGTTA 522907 >seq547 Length=620828 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 191396 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 191455 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 191456 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 191515 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 191516 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTAAGGGTCTTCAC 191575 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 191576 GAAGATCTGCAT 191587 >seq487 Length=725459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 202799 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 202740 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 202739 TCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 202680 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 202679 CGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 202620 Query 42199 A 42199 | Sbjct 202619 A 202619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209011090720