Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq516 352 3e-92 >seq516 Length=1641395 Score = 352 bits (390), Expect = 3e-92 Identities = 1093/1670 (65%), Gaps = 36/1670 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 |||||| | ||||||| |||||| || || |||| ||| |||||||||||| |||| || Sbjct 1417105 AATTACCAATACTTTGGCTTCAAGACCCTTGAGAGGTCATACCTCCTCAAGCTGGACGGG 1417046 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | | ||||| |||| || || || | ||||| || || |||| || || || Sbjct 1417045 AAGATCGCCGAGAGACCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGGGAC 1416986 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAG--AGGTAT--ACCAT 93890 || | | || | | | | || || || | |||| || | | ||| Sbjct 1416985 AACGTTGAGCGCGTCATCGAGACCTACA---ACTTGATGT-CAAGCAAGTTTTTCACCCA 1416930 Query 93891 GGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT 93950 ||| | || || ||||||||||| || ||||| | | || ||||||| || ||||| Sbjct 1416929 CGCCTCTCCCACACTGTTCAACGCCGGTACCCCCCAGGCTCAACTGTCTTCTTGCTTCCT 1416870 Query 93951 GAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 | ||| | |||| ||||||||| || || | ||||| |||||| ||||| | Sbjct 1416869 TGTCGAC-ATGAAGGAGGACTCCATCGAAGGCATCTACGACACTCTCAAGACGTGTGCCA 1416811 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||||| || || || || || || | |||||| | | || || | || | Sbjct 1416810 TGATCTCAAAGATGGCTGGCGGCATTGGCATGAACGTCCACCGCATTCGCGCTACTGGCT 1416751 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | |||||| ||| |||||||||||||||||||| || |||| ||||| || || |||| Sbjct 1416750 CGTACATCGCCGGCACCAATGGCACCTCCAACGGTGTCATCCCCATGCTTCGAGTTTTCA 1416691 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| | || |||||||| ||||||||||| | | | || | ||||| ||| Sbjct 1416690 ACAACACCGCTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCCTTCGCCATCT 1416631 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 ||||||||||||||||||| || || | ||| | || || || ||||||||||||| Sbjct 1416630 ATCTCGAGCCCTGGCACGCCGATGTTTTCGAGTTCTTGGATCTCCGCAAGAACCACGGCA 1416571 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | ||| | || |||||| || |||||| | || || || || |||| Sbjct 1416570 AAGAGGAGGTTCGTGCCCGCGATCTCTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGA 1416511 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | || || || || || |||| || | |||||||| || || ||||| || Sbjct 1416510 AGAGGGTGGAAAAGAATGGCGAGTGGACGCTCATGTGTCCCAACGAGTGCCCCGGCCTTG 1416451 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 ||||| | ||| ||||| | |||||||| |||| | ||| |||||||| Sbjct 1416450 CCGACTGCTATGGCGAAGAGTTTGAGGCCTTGTATGAGAAGTACG-AGCGCGAGGGCAAG 1416392 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | ||| | | ||| ||||| ||| || || | || | |||| ||| Sbjct 1416391 GGCCGCAAGACCCTAAAGGCTCAAAAGCTCTGGTATGCCATTCTCGAGGCACAGACCGAG 1416332 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || |||| || | ||| | | ||||| | |||| |||| ||||||| || || Sbjct 1416331 ACTGGTAACCCGTTCATGCTTTATAAGGATCACGCCAACCGCAAGAGCAACCAGAAGAAC 1416272 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| ||| | || ||||||||||| ||||| | ||||| | || ||| Sbjct 1416271 CTCGGTACCATCCGCAATTCCAATCTGTGCACTGAGATCATTGAGTACTGCGCGCCTGAC 1416212 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | ||||| || ||| ||| ||| || |||| | | || || ||| |||| Sbjct 1416211 GAGGTCGCTGTTTGCAACTTGGCCTCGCTCGCCCTGCCTGCATTTGT-CGA-----CTAC 1416158 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGA-ACTTCGCGGGAAGGATGGTCT 94726 | | | | | | | ||| | || |||| ||| || | | || | | || Sbjct 1416157 A--ACGAGAG-TGCATACGACTTCCAGAAGCTCCATGAGACCACCCAGGTTG--TTGTAC 1416103 Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 |||||||||||| | || || ||| |||||| || |||||||| ||| | Sbjct 1416102 GCAACCTGAACAGGATCATTGATGTCAACCACTACCCTGTTCCGGAGGCTCGTAACAGCA 1416043 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || || || || |||||| | || ||||| ||| | || || || | || Sbjct 1416042 ACATGCGTCACCGCCCTATCGGCCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTC 1415983 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 |||||||||||| ||| || || || | | | ||| || || ||||| | || Sbjct 1415982 TGCGTCTGCCCTTCGAGTCCCCTGAGGCTCGCGATCTTAATAAAAAGATCTTCGAGACCA 1415923 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 | || ||| || ||| || || || |||||| ||| | || | ||| Sbjct 1415922 TCTACCACGCTGCTCTGACCATGTCGGTGCAGCTGGCCA---AGGAGGAGGGTACCTACG 1415866 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | || | | || ||||| | ||||| | |||| ||| | ||||| |||| Sbjct 1415865 AGTCTTACGAGGGTTCGCCTATCTCCAAGGGCGAGCTCCAGTATGACATGTGGGGAGTGA 1415806 Query 95027 AGCCCTCGGGTCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGTGT 95084 |||| || | | | |||||||| ||| | | || || | | | |||||||| Sbjct 1415805 AGCCGTCCGACTTATGGGACTGGGACTCGCTGAAGGAGCAGA--TCACGCAGCACGGTGT 1415748 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 ||| |||||||| ||||||||||| || ||| ||| |||||||||| ||| | Sbjct 1415747 ACGCAACAGTCTGCTTGTTGCCCCCATGCCTACTGCCAGCACCTCGCAGATCCTGGGCTA 1415688 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 ||| |||| |||||||| | |||||||||| | ||| | | || || || ||||| || Sbjct 1415687 CAATGAGTGCTTCGAACCGTACACCTCCAACATCTACCAGCGCCGTGTACTGGCCGGCGA 1415628 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGT 95262 |||| ||| ||||| || || ||| ||| ||| |||| ||||| | Sbjct 1415627 GTTCCAGGTCGTCAACCCCTGGCTTCTCAAGGATCTG--GTCGAGATGGGCCTGTGGTCT 1415570 Query 95263 GACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATA 95322 || | ||||||| | | || ||||| || || |||||||||||| | || Sbjct 1415569 GATGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCTGTTCAGAACATCCCGAACATC 1415510 Query 95323 CCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 |||| || | ||||| || ||||||||||| ||||| ||| | ||||| Sbjct 1415509 CCGGCCGAGGTGAAGGCTCTGTACAAGACCGTCTGGGAAATCTCTCAGCG 1415460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494719749305680