Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq380 129 6e-25 seq516 114 1e-20 seq449 109 5e-19 seq547 100 3e-16 >seq380 Length=739652 Score = 129 bits (142), Expect = 6e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || ||||| | ||| | ||| | | |||| ||||| |||||||||||||||||| Sbjct 523847 CCGCCACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTC 523788 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | || ||||| | | |||| ||||| || ||||| || || Sbjct 523787 AGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGG 523728 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | ||| || | ||||| | |||||| | Sbjct 523727 ATACCCTCCTTGTC-TTGAATCTTGGACTTCACGTTG-TCAATCGTGTCTGACGACTCGA 523670 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | ||| | ||| || ||||| ||||| || || || || ||||| Sbjct 523669 CCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||||||||| || || || | | |||||||| ||||||||||| ||| | Sbjct 523391 CCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGAC 523332 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || || | | || || ||||| ||||| || || Sbjct 523331 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGA 523272 Query 138508 ATACCTTCTTTGTC 138521 || || || ||||| Sbjct 523271 ATGCCCTCCTTGTC 523258 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||| | | |||| ||||| || |||||||||||| || |||||| ||||| | ||| Sbjct 523596 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAATTG 523537 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 || |||| |||| | ||||| ||||| || || ||||| || || || ||| | | Sbjct 523536 CTTTCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATC-CTGAATCT 523478 Query 138531 TTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 | | || |||| || | || || | ||||| ||||| | || | || || ||| Sbjct 523477 TGGACTTGACATTG-TCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTCTTGCCA 523419 Query 138589 GTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || ||||||||||| Sbjct 523418 GTGAGGGTCTTGACGAAAATCTGCAT 523393 >seq516 Length=1641395 Score = 114 bits (126), Expect = 1e-20 Identities = 467/720 (65%), Gaps = 27/720 (4%) Strand=Plus/Plus Query 153812 GCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAG 153871 |||||||| |||||| ||| |||| ||||||||| ||||| ||||||||||| || Sbjct 1416395 GCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCGGCAAG 1416454 Query 153872 GCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTT---GACGCGTCG 153928 |||||| |||| | |||||||| |||| |||| ||| | || || | Sbjct 1416455 GCCGGGGCACTCGTTGGGACACATGAGCGTCCAC---TCGCCATTCTTTTCCACCCTCTT 1416511 Query 153929 CATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGC 153988 |||||| ||||| || | |||||| || | ||| ||||| || | | ||||| | Sbjct 1416512 CATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGGC---ACGAACCTCCTC 1416568 Query 153989 --GCCCATGTTGCGTTTC--AGAT-TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCA 154043 || || | | || | |||| || || | | | | |||||||||||||| || Sbjct 1416569 TTTGCCGTGGTTC-TTGCGGAGATCCAAGAACTCGA-AAACATCGGCGTGCCAGGGCTCG 1416626 Query 154044 ATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATA 154100 | |||| ||| | ||| || ||| || || ||||| ||||||| ||| | | Sbjct 1416627 AGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTG 1416686 Query 154101 TTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATC 154160 |||||||| || || | |||||| | ||| | | |||||| ||||| ||| Sbjct 1416687 TTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGAGGTGCCATTGGTGCCGGCGATG 1416746 Query 154161 TTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGA 154219 | ||| ||||| | | || ||||| | |||||||||||| ||| | |||||| Sbjct 1416747 TACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGCCAGCCAT-CTTTGA 1416805 Query 154220 TATGGCAGCGCAGTCGCC--CAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACG 154277 || || ||| || | || || ||||||||| |||||| || || | | Sbjct 1416806 GAT--CATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATG 1416863 Query 154278 CCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGA 154337 ||| | ||| || ||| ||| ||| | | | || || || || || |||||| Sbjct 1416864 TCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGGGA 1416923 Query 154338 CTCGCGTGCGT-AAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGAT 154396 ||||| || ||| | || | | ||||| | ||| || |||||| || || | Sbjct 1416924 GAGGCGTGGGTGAAAAACTTGCTTG-ACATCAAGTTGTAGGTCTCGATGACGCGCTCAAC 1416982 Query 154397 ATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 | || || || |||| || || ||||||| ||||||||| || | ||||||| Sbjct 1416983 GTTGTCCCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCGAT 1417042 Query 154457 TCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 | ||| | ||| | ||| ||| | || ||||| ||| | || || || | ||| Sbjct 1417043 CTTCCCGTCCAGCTTGAGGAGGTATGACCTCTCAAGGGTCTTGAAGCCAAAGTATTGGTA 1417102 >seq449 Length=641369 Score = 109 bits (120), Expect = 5e-19 Identities = 340/523 (65%), Gaps = 25/523 (5%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| ||||||| ||||| | ||||| | ||||||||| | | | || Sbjct 272327 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACCAGAAGTCC 272268 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | ||| |||| | || ||||| || || ||||| | || ||| ||| | Sbjct 272267 ACCTTTGCCCAGCGTCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCC 272208 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || || ||||||| | | || | | || | |||||||| ||||| ||| ||| Sbjct 272207 TTCGCTTCCATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCTCTAAC 272148 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---------AC 52556 ||| | || || || ||||| || || ||||| ||||| || ||||||| || Sbjct 272147 GAGCTTATCTCTCGTGACGAGGGTCTCCACACCGACTTCGCCTGCCTCTTGTTTTCTCAC 272088 Query 52557 TACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAG 52616 ||||| ||| | | | | | | ||||| || ||| || Sbjct 272087 CTCAAGAACCGCCCTAGCAAGCAGGTCATTGAGGACATTAT--------TGTC----GAC 272040 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 || || || || ||||||| || || | || ||||| || || || |||||| Sbjct 272039 GCTGTCAAGATTGAGCAGGAGTTCTTGACCGAGGCTCTGCCCTGCGCTCTTCTCGGCATG 271980 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCT 52735 ||| || | | ||| ||||||||||||| || ||||| |||||| ||| ||| || Sbjct 271979 AACTCGAACTTGATGAAGCAGTACATCGAGTTCGTTGCGGACCGTCTGCTTGTTGCC-CT 271921 Query 52736 CGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 ||||| | | ||| || ||| || ||| || || || || ||| | ||||| || | Sbjct 271920 -GGGCAACAACAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCC 271862 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | | |||||||||||||| ||||||||||| || | ||| || Sbjct 271861 TCGGAGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTA 271819 >seq547 Length=620828 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | | |||||||| || |||||||||||| Sbjct 191361 CCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 191420 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| |||| | ||||| ||||| || || Sbjct 191421 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 191480 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 191481 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 191539 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || ||||| || || || || || || ||||||||| Sbjct 191540 CTCAAGGGTGATAGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCATG 191588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258938569760