Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq380 134 1e-26 seq547 105 6e-18 seq487 91.5 1e-13 seq516 82.4 7e-11 >seq380 Length=739652 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| || ||||||||||| || | ||||||||| || ||||| ||||||||| | Sbjct 523391 CCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGAC 523332 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || || || || |||||| | |||| |||||||| ||||| || Sbjct 523331 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGA 523272 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| ||| || | ||| || Sbjct 523271 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTATCAGATGACTCTAC 523213 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || |||||||| || || || || Sbjct 523212 CTCAAGGGTAATGGTCTTGCCGGTGAGTGTCTTGAC 523177 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || ||||| ||||| ||| Sbjct 523111 CCACCGCGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 523052 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || |||||| | |||| |||||||| |||||||| Sbjct 523051 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGA 522992 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | |||||| Sbjct 522991 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 522932 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 |||| || | || |||||||| Sbjct 522931 TCGAGAGTGATGGTCTTGCCGGT 522909 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| || || ||| ||| || | || ||||| Sbjct 523589 GTTGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAATTGCTTTCCG 523530 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||||||||| ||||| || || |||||||| ||| || || |||| Sbjct 523529 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTTGGACTTG 523470 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| || || | | ||| || || | ||| | || ||||| || || || Sbjct 523469 ACATTGTCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTC 523410 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 523409 TTGACGAAAATCTGCAT 523393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || ||||| || | || | ||| | || || || || ||||| ||||| |||| | Sbjct 523847 CCGCCACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTC 523788 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| || ||||| |||| | || ||||| ||||| || Sbjct 523787 AGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGG 523728 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| || || ||| | |||| || | ||||| | |||||| Sbjct 523727 ATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTG-TCAATCGTGTCTGACGACTCGAC 523669 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| || ||||| || || || || ||||| Sbjct 523668 CTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 >seq547 Length=620828 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| || | || | || ||||| || || || ||||| ||| Sbjct 191358 GCACCACCACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 191417 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| || || ||||| || || ||| ||||||| |||||||| ||||| Sbjct 191418 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGG 191477 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 191478 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 191537 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | || || || || || || || || || ||||||||| Sbjct 191538 ACCTCAAGGGTGATAGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCATG 191588 >seq487 Length=725459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || || ||| ||||| Sbjct 202797 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 202738 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || ||||| ||||||||||||||| ||| || ||||| | ||| Sbjct 202737 AAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 202678 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 202677 ATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 202618 >seq516 Length=1641395 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| ||||| ||||||||||| || || || | | | || | |||| |||| ||| Sbjct 1415611 GGTTGACGACCTGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTACG 1415670 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 | ||||| |||| |||| || || ||||||| || | || ||||||||| || | Sbjct 1415671 GTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGCAA 1415730 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG 146207 | |||| | ||| | || ||||| Sbjct 1415731 CAAGCAGACTGTTGCGTACACCGTG 1415755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497483381920