Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq380 120 3e-22 >seq380 Length=739652 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || ||||| || ||||||||||| ||||| || || ||| Sbjct 523622 ATACCTCCACGGAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG 523563 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || ||| |||||||| ||||| ||| | |||||||| |||||||| | Sbjct 523562 --GACAGAGTACGACCATCCTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCGG 523505 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || ||||| ||||| || |||| || | || || ||||||| Sbjct 523504 GGGGAATACCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATCGTATCTGAAGACT 523445 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || | || ||||| || || || || || ||||| ||||| Sbjct 523444 CAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 523393 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||||||||| || || || || ||||| | || ||| ||| Sbjct 523829 ACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCC 523770 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | || | ||||||||||| || || || || || || |||||| Sbjct 523769 AACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGA 523710 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | || | || | ||||| || |||||||| || | |||| ||| || Sbjct 523709 ATCTTGGACTTCA-CGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTT 523651 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| || || || |||||||| Sbjct 523650 GCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000047277680