Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq516 210 3e-49 seq449 131 2e-25 seq384 95.1 1e-14 >seq516 Length=1641395 Score = 210 bits (232), Expect = 3e-49 Identities = 944/1471 (64%), Gaps = 55/1471 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| ||||| || || ||||||||||||| |||| ||| || | ||| | Sbjct 1415652 TAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTG 1415711 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| || | || || |||||||| | ||| | | | || | ||| Sbjct 1415712 GCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCTCC 1415771 Query 116023 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 || || | ||||||||| | || | | | || | | ||||||| ||| ||||| Sbjct 1415772 TTCAGCGAGTCCCAGTCCCATAAGTCGGAC---GGCTTCACTCCCCACATGTCATACTGG 1415828 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 116139 || || | ||| ||||| ||||| | | ||| || | ||||| ||| ||| Sbjct 1415829 AGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCC 1415888 Query 116140 AATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 | | | || | | | || || ||||| || || ||||| || || ||| Sbjct 1415889 AGCTGCACCGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTA 1415945 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA--AATAAATACATCCGCGA 116254 | | ||||| ||| || || | ||||| || | || ||| |||| || | Sbjct 1415946 AGATCGCGAGCCTCAGGGGACTCGAAGGGCAGACG-CAGAGCCAAGAAAG-CATCAGCAA 1416003 Query 116255 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC- 116313 ||||||||||||| ||||| || ||||| || | ||| || || ||||| |||| Sbjct 1416004 GACCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTTGCTGTTACGAGC---CTCCG 1416060 Query 116314 --ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 || || || || ||| || | ||| || || || ||||||| ||| Sbjct 1416061 GAACAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGG 1416120 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---ACATACTTAGGAA 116428 | ||||| ||||| | | | || | ||| | |||| | | | ||| | ||| | Sbjct 1416121 TCTCATGGAGCTTCTGGAAGTCGTA--TGC-ACTCTCGTTGTAGTCGACAAATGCAGGCA 1416177 Query 116429 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 116488 |||||| || |||| || || |||| | ||| || | |||||| || || | Sbjct 1416178 GGGCGAGCGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCT 1416237 Query 116489 CCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 | || |||| ||| ||| | ||||| || | |||||| || || ||| ||| Sbjct 1416238 CAGTGCACAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGG 1416297 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 |||||| || ||||| | || | || ||||| || || | || |||||| || | Sbjct 1416298 CGTGATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCAT 1416357 Query 116609 TCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTAC 116661 ||| | | | | | || || | | ||| || |||| |||| ||||||| Sbjct 1416358 ACCAGAGCTTTTGAGCCTTT---AGGGTC-TTG---CGGCCCTTGCCCTCGCGCTCGTAC 1416410 Query 116662 TTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATC 116720 || || | ||||||||||||||| || | ||| || | || || || || | Sbjct 1416411 TTCTCATACAAGGCCTCAAACTCTTCGCC-ATAGCAGTCGGCAAGGCCGGGGCACTCGTT 1416469 Query 116721 TGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 116780 ||||| | ||| | ||| | ||| || || |||| |||||||||||| || || || Sbjct 1416470 GGGACACATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAAT 1416529 Query 116781 CCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 116840 |||||| || ||||||||| || ||| | || || | || || || || | Sbjct 1416530 CCAGAGGGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAG 1416589 Query 116841 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 116900 ||||| || || | | ||| |||||||| || || || || | |||| | || Sbjct 1416590 ATCCAAGAACTCGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGG 1416649 Query 116901 GCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGG 116957 ||| ||| |||||| || || | || || ||| || || |||||||| || Sbjct 1416650 GCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGG 1416709 Query 116958 AATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACA 117015 |||| ||| | || |||||| || || ||| |||||| | | || | | Sbjct 1416710 GATGACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCC--AGTAGCGCGAATG 1416767 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGA 117075 ||||| || ||| ||||| || || ||| ||||||||| || ||| | ||||| Sbjct 1416768 CGGTGGACGTTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGA 1416827 Query 117076 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 117135 || ||||||| || ||||| ||||| |||| | ||| |||||||| |||| | Sbjct 1416828 GTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGT 1416887 Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG- 117194 || | | || ||||| |||||||| || || || | |||||| ||| | | |||| Sbjct 1416888 TGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGA--AAAACTTGC 1416945 Query 117195 -GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTG 117253 |||||| | ||||||||| | ||| || || ||||| ||||||| | Sbjct 1416946 TTGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAG 1417005 Query 117254 AGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGT 117313 || ||||| | ||||| |||||| | || | | || || ||| | |||||| Sbjct 1417006 CAACACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCCAGCTTGAGGAGGT 1417065 Query 117314 AACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | | |||| | |||||||| ||||| || Sbjct 1417066 ATGACCTCTCAAGGGTCTTGAAGCCAAAGTA 1417096 >seq449 Length=641369 Score = 131 bits (144), Expect = 2e-25 Identities = 306/458 (67%), Gaps = 18/458 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| || ||||| ||| |||||||| Sbjct 271818 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCAT 271877 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCC----CAATCTGTTTGAG 127344 || || || ||||| | || || | | |||||| ||| ||| || Sbjct 271878 GAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGGGCAACA------AG 271931 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| |||| ||| |||| ||||||| |||| | |||||||| |||| || Sbjct 271932 CAGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGAAG 271991 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 || || || || || | |||| ||| |||||| | ||||| || | || Sbjct 271992 AGCGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATAAT 272051 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521 | | | ||| | | | ||| | | ||| | || ||||| || || Sbjct 272052 GTCCTCAATGACCTGCTTGCTAGGGCGGTTCTTGAGGTGAGAAAACAAGAGG--CAG-GC 272108 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || |||||||||||||||||| ||||| || || || ||||| |||||| || Sbjct 272109 GAAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGG 272168 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||||||||| |||||||||| |||||| || | | || | || |||||||| || Sbjct 272169 CATGAGACCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACC 272228 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||| || || || |||| |||||||| |||||||| Sbjct 272229 CTCAACGGCAGCAAAGGCAACTAGACGCTGGGCAAAGG 272266 >seq384 Length=763591 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||| | |||||| |||||||| ||||| | ||| || || || | || || | Sbjct 74239 ACCAATGGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTGCGAGCCGTCGC 74180 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CG 12992 |||| ||||||||||| | ||||||||| ||||||||||| ||||| | || | Sbjct 74179 GAAGAGGTCTCGCACTCTGGATGGACCGACACCAACAAACATCTCAACAAACTCGGAACC 74120 Query 12993 GCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 || || | || |||||| ||| ||| || || || | || |||||| || ||| Sbjct 74119 GCTGACGCT--GAAGAAGGGCACGCCGGACTCGCCAGCAGTAGCCTTGGCGAGCAGCGTC 74062 Query 13053 TTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 || || || || || || ||||| | |||||| || |||||| ||||||| Sbjct 74061 TTACCGGTTCCCGGAGGACCGGCGAGGATGGCACCGCGGGGGATCTTGGCACC 74009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502920787280