Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq516 163 5e-35 seq449 123 4e-23 >seq516 Length=1641395 Score = 163 bits (180), Expect = 5e-35 Identities = 411/617 (67%), Gaps = 6/617 (1%) Strand=Plus/Plus Query 205124 TTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTG 205183 ||||||||||| || | |||| || | || |||||||| ||| || || ||| Sbjct 1416468 TTGGGACACATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGA 1416527 Query 205184 ATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTC 205243 ||||| ||| | || ||||| ||||| | || | || | || ||||||| Sbjct 1416528 ATCCAGAGGGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGG 1416587 Query 205244 AAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCT 205303 | |||| | | || ||||||||||| ||||| | | | ||| | ||||| Sbjct 1416588 AGATCCAAGAACTCGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCG 1416647 Query 205304 GGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATC 205363 || | |||||| ||||||||||| || ||||| | |||||||||||| ||||| Sbjct 1416648 GGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATG 1416707 Query 205364 GGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACG 205423 || | | |||||||| ||| || || |||| | |||| |||||| ||| | | | Sbjct 1416708 GGGATGACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATG 1416767 Query 205424 TTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC-TCTTGCAG 205482 | || | | |||||| ||||||| ||| | |||| ||| ||| ||||| || Sbjct 1416768 CGGTGGACGTTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTG-AG 1416826 Query 205483 AGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCACGAAGCCA 205541 |||| |||||||||| ||||||| || ||| || |||| || || |||| |||| || Sbjct 1416827 AGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCA-TGTCGACAAGGAAGCAAGAAGACA 1416885 Query 205542 GCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTT-C 205600 | | || | ||| || |||| ||| || ||||| ||||||| |||| ||| | Sbjct 1416886 GTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGC 1416945 Query 205601 TCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATG 205660 | | || | |||||||||| | |||| ||| | | | || ||||| | Sbjct 1416946 TTG-ACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACA 1417004 Query 205661 GCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGAGCAGA 205720 || | | ||||| | ||| || |||||||| | | || ||| || |||||| || Sbjct 1417005 GCAACACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCCAGCTTGAGGAGG 1417064 Query 205721 TAGGCTCTCTCTAGGGT 205737 || | ||||| ||||| Sbjct 1417065 TATGACCTCTCAAGGGT 1417081 Score = 156 bits (172), Expect = 7e-33 Identities = 388/575 (67%), Gaps = 22/575 (4%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGC-TTCTCAGATAGTACAT 203895 || ||| || |||||||| || | | | |||| ||||| ||| ||| |||||||| Sbjct 1415264 CTGGTCGACAGTGAACTGGATAGGGG---CAGCAGCCGCCTGAGTTCGCAGGTAGTACAT 1415320 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| ||||| || ||| ||| | ||||||| | | |||| || | | Sbjct 1415321 GCCTGTCTTCAGGCCGAGCTTCCAACCGGCGAAGTGCATGCTGGTGATCTTGCCCATGGT 1415380 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||||| |||||||||||| || ||||| ||||||||| ||||| || || |||| Sbjct 1415381 CGGGTCCTTCATGTGAATGTTGAGGGACTGCGACTGGTCGATG-AAGGCACCACGGTCTG 1415439 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC--TCT 204072 ||||||| | | || |||| ||| || || ||||| || |||||| ||| | || Sbjct 1415440 CGGCCATCTGAACAACGGTCCGCTGAGAGATTTCCCAGACGGTCTTGTACAGAGCCTTCA 1415499 Query 204073 GGTGTGTTGAGGCACATCTTC-CCACGTCCTGATC-GAGCCGTTGTCGGCCATCAGTCTC 204130 | | | | || ||| | || |||| | || ||||| ||||| || | | Sbjct 1415500 CCTCGGCCGGG----ATGTTCGGGATGTTCTGAACAGAACCGTTCTCGGCGATGATACGG 1415555 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || | | || ||||| ||||| | || ||| ||| | || ||||||| Sbjct 1415556 TTCTTCATGGCATCAGACCACAGGCCCATCTCGACCAGATCCTTGAGAAGCCAGGGGTTG 1415615 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | || ||| || || |||| ||| || | || | | | |||| |||| | |||||| Sbjct 1415616 ACGACCTGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTACGGTTCG 1415675 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || ||| |||| ||| | ||||| | ||||||||| || |||||||| || | ||| Sbjct 1415676 AAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGCAACAAGC 1415735 Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGT--CGTGC 204367 || |||||| ||||||| | || |||| |||||| ||| ||||| | | Sbjct 1415736 AGACTGTTGCGTACACCGTGCTGCGTGA-TCTGCTCCTTCAGCGAGTCCCAGTCCCATAA 1415794 Query 204368 ATCGCACTGGGTTTCACGCCCCACATGTCGAACTG 204402 ||| || || ||||| ||||||||||| |||| Sbjct 1415795 GTCGGAC--GGCTTCACTCCCCACATGTCATACTG 1415827 >seq449 Length=641369 Score = 123 bits (136), Expect = 4e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 159913 AAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGA 159972 ||||| |||||| || |||||| ||| || |||||||| |||||||| | |||||| || Sbjct 272094 AAACAAGAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGA 272153 Query 159973 CATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACC 160032 | | || || ||||||| || ||| || ||||| || |||| || || ||||| Sbjct 272154 GAATGTCAGACCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACC 272213 Query 160033 GCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTT 160092 |||||| ||||| ||||| ||||| ||||| || || || | || |||| | || || Sbjct 272214 GCTAAAGAAGATACCCTCAACGGCAGCAAAGGCAACTAGACGCTGGGCAAAGGTGGACTT 272273 Query 160093 GGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGG 160143 ||| | ||||| | ||||| || |||||| ||||| ||||| || Sbjct 272274 CTGGTCGGAGATCCACTTGAGAGCCCAGTCGGCCTTC-TTGCGAATGCAGGG 272324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795149653792480