Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq547 152 6e-32 seq487 141 1e-28 seq380 114 1e-20 >seq547 Length=620828 Score = 152 bits (168), Expect = 6e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 191396 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 191455 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 191456 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 191515 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | ||||| || || ||||| || || || || Sbjct 191516 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTAAGGGTCTTCAC 191575 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 191576 GAAGATCTGCAT 191587 >seq487 Length=725459 Score = 141 bits (156), Expect = 1e-28 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| | Sbjct 202799 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 202740 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 202739 TCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 202680 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 202679 CGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 202620 Query 46584 A 46584 | Sbjct 202619 A 202619 >seq380 Length=739652 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || || || | || |||||||||||||| ||||| Sbjct 523076 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 523017 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 523016 AATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 522957 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| || || || || | |||||||| ||||| || Sbjct 522956 GTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 522909 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | ||||||||||||| || | ||| |||||| || || ||||| ||||| Sbjct 523391 CCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGAC 523332 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || ||||| |||||||| ||||| |||| ||||||||||||| || Sbjct 523331 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGA 523272 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| |||||| ||||| ||| | | | || || || || || Sbjct 523271 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCAGATGACTCTAC 523213 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 || | || ||||| ||||| || || || || || Sbjct 523212 CTCAAGGGTAATGGTCTTGCCGGTGAGTGTCTTGAC 523177 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| ||||| || | || || | ||||| |||||||| Sbjct 523583 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAATTGCTTTCCGGCGAAG 523524 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||||| || | | |||||| ||| ||||| ||||| | Sbjct 523523 ATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTTGGACTTGACATTG 523464 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| || || || || || | ||||| || ||||| || || || || || Sbjct 523463 TCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACG 523404 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 523403 AAAATCTGCAT 523393 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || | |||||| | || ||||| | || ||||| || || ||||| Sbjct 523854 TTATTGACCGCCACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTA 523795 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| |||||||| | || || | |||||| || || || || | || |||||||| Sbjct 523794 GTCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTC 523735 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCG 46538 || || | | ||||||||| ||||| ||| | ||| | || |||||| || Sbjct 523734 GGGGGGGATACCCTCCTTGTCTTGAATCTTGGACTTCA-CGTTGTCAATCGTGTCTGACG 523676 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || |||| ||| || || ||||| || || || || || ||||||||||| Sbjct 523675 ACTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234457462160