Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq449 145 8e-30 seq547 122 9e-23 seq380 113 5e-20 seq487 105 7e-18 >seq449 Length=641369 Score = 145 bits (160), Expect = 8e-30 Identities = 199/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| ||| || || | || ||||| | ||||||||| ||| || || Sbjct 272433 GTAGGTGTCGATAAGGAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 272492 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || ||||| || || || ||| | ||| |||||||| || || Sbjct 272493 GCCGTAGAAGCAACGGGCCTCTGGAACTTGGACCTCTCCACTGAAGCGCTCGACAAGGTT 272552 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA--ATGG 133344 |||||||| ||||||||| |||||||| ||||| || | ||| |||||| || Sbjct 272553 CTCGTTGACAATGCCGTCGGAAGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTATTT 272612 Query 133345 CGC-TCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 | | || | | | || | | ||||||| | |||||||||||| || | |||||| Sbjct 272613 CTCATCATCATTGATCTTGTTGTTCCAGTCGTGGAGGTCCTTGGACAGATCAATCTCCTC 272672 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || ||||| || || |||||||| Sbjct 272673 GGCAGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 272708 Score = 131 bits (144), Expect = 2e-25 Identities = 321/479 (67%), Gaps = 6/479 (1%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 271834 TTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 271893 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||| |||| || | |||| | || ||||| | ||| || ||||||||| Sbjct 271894 GTAGACTTGTAGACCTTGTTGTTGCCCAGGGCAACAAGCAGACGGTCCGCAACGAACTCG 271953 Query 132745 ATGTATTGCGACATGGT-TTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGG 132802 ||||| ||| ||| |||| | || | || || ||| |||| ||||| || |||| Sbjct 271954 ATGTACTGCTTCATCAAGTTCG-AGTTCATGCCGAGAAGAGCGCAG-GGCAGAGCCTCGG 272011 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | | || ||||| || ||| |||||| | || ||| || | | | || Sbjct 272012 TCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATAATGTCCTCAATGACCTGCTTGC 272071 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 | || || | | | || |||| | ||| || |||||| || | ||||||| Sbjct 272072 TAGGGCGGTTCTTGAGGTGAGAAAACAAGAGGCAGGCGAAGTCGGTGTGGAGACCCTCGT 272131 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | || || || ||||| ||| |||| ||||||||||| ||||| || || |||| Sbjct 272132 CACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGCATGAGACCGCGCTTCTTCAGCC 272191 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | || |||| ||||| || |||||||| ||||| ||||| || || || || | Sbjct 272192 AGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACCCTCAACGGCAGCAAAGGCAACTA 272251 Query 133043 GGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | |||| | | || |||| |||| | | || |||||| || ||||| |||||||| Sbjct 272252 GACGCTGGGCAAAGGTGGACTTC-TGGTCGGAGATCCACTTGAGAGCCCAGTCGGCCTT 272309 >seq547 Length=620828 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || |||||| | || || ||| | || Sbjct 191587 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 191528 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 191527 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 191468 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 191467 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 191408 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || | || |||||| || | || || Sbjct 191407 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTGCGTCTGCGTGGTGG 191361 >seq380 Length=739652 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| |||||||| |||| |||||| || |||||| | | | | | || Sbjct 522909 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 522968 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| ||||| ||||||| ||||| || |||| ||| ||||| Sbjct 522969 AAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 523028 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | || || ||| |||||||||||| || ||||| | || || || Sbjct 523029 CAGCTCGAGGATGGCCGTACGCTCTCCGACTACAACATTCAGAAGGAGTCCACTCTTCAC 523088 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 523089 TTGGTTCTCCGT 523100 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || || || | || |||||| | | Sbjct 523621 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGTCA 523680 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || || | ||||| ||||| || ||| ||||||| Sbjct 523681 GACACGATTGACAACG-TGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCA 523739 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || || || ||| |||| || | ||||| || | ||||||||| Sbjct 523740 GCAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACAA 523799 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || |||||| | || || ||| | || || ||||| | ||||| Sbjct 523800 CATTCAGAAGGAATCAACCCTCCATCTTGTTCTCCGTTTACGTGGCGG 523847 >seq487 Length=725459 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 202619 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACGATC 202678 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| ||||| | ||||| ||||| | Sbjct 202679 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTTG 202738 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| |||||||| ||||||||||||||| ||| Sbjct 202739 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAG 202798 Query 38433 G 38433 | Sbjct 202799 G 202799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169311294720