Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq516 282 5e-71 seq448 152 7e-32 >seq516 Length=1641395 Score = 282 bits (312), Expect = 5e-71 Identities = 765/1169 (65%), Gaps = 9/1169 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || || ||||| || ||||| || || || | ||| || ||||| || || || Sbjct 519619 TCGTCCTCATCCTTGTACTTCTCAGCCTCAGAAAGCATGCGCTCGATGTCCTCCTTGGAA 519560 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || ||||| |||||| | ||| || || | | |||| || | Sbjct 519559 AGGCGGCCCTTGTCGTTGGTAATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCAACG 519500 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||||| |||||| | || | || || || | Sbjct 519499 GCGGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTGACCTCGATCTGGGGAACA 519440 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| || ||||| || | || || | || || | |||| ||| | Sbjct 519439 CCGCGGGGAGCGGGGGGGATACCGGTAAGCTCGAACTTGCCGAGAAGGTTGTTGTCCTTG 519380 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || ||||| || ||||| | || || |||| || || || Sbjct 519379 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATGAGGACACCAGGCTGGTTGTCGGAGAAG 519320 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || || | | |||| Sbjct 519319 GTGGAGAAGACCTCGGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTC 519260 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || |||| || ||||||||||| | ||||| ||| | |||| Sbjct 519259 ATCATGCCACCAGCGGTCTCGATACCGAGAGACAGAGGGGCAACGTC---GAGAAGCAGG 519203 Query 6989 ---TCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 || | | | ||| ||||| | | |||||| || ||||| | || Sbjct 519202 ATCTCGTTGGTGGTCTTGTTGGAAGTGTCACCGGACAGGATGGCAGCCTGGACGGCGGCA 519143 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| || || |||||||||||||| || | || || | || || ||||| || || Sbjct 519142 CCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAG 519083 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || || | | | || || ||||| || || || |||||||| | ||||| || Sbjct 519082 TCGGAAATGAGCTTCTGGATGCGGGGGATACGGGTGGAACCACCGACAAGGACGATCTCG 519023 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | || | || || |||||||| | ||| | || ||||| || | || Sbjct 519022 TGGACCTGGGACTTGTCGATCTTGGCGTCGCTGAGGACGCGGTCGACGGGCTGGATGGTG 518963 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 ||||| | |||| || || ||||| || || |||||||| ||||| || |||||| Sbjct 518962 GAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAAGCGAGCACGGGTGATGGAGGTGTAGAAA 518903 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 |||| || ||| | | || || || || |||| || || || | || || | || Sbjct 518902 TCAATACCCTCGAACAGGGAGTCGATCTCGATGGAAGTCTGGGCGGAAGAGGACAGGGTG 518843 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || ||||| || || || || | ||||||||| || || | ||| |||| | Sbjct 518842 CGCTTGGCACGCTCGCAAGCGGTGCGGAGACGACGAAGAGCGCGAGCGTTGGCGGACAGG 518783 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || ||||| || || || || ||||| | |||||| | ||| | ||||| Sbjct 518782 TCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGGTTGACGAGACGGTTGTCGAAG 518723 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||||||| || || || ||||| | || || || |||||||| | ||| Sbjct 518722 TCCTCACCACCCAAGTGGGTGTCACCGGCGGTGGACTTAACCTCGAAGATACCCTCCTCA 518663 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | || ||||| || ||||||||||| || || || ||||| ||||| Sbjct 518662 ATGGTCAGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGAACGTTGCGC 518603 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | || ||||| ||||||||||| || || || || || || || || || || Sbjct 518602 TCGCCCTCGGCCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATG 518543 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 |||||||| ||| || || ||||| | || || || || || || || || || Sbjct 518542 ATACGAAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGCTGGGAG 518483 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 ||||| |||||||| ||||| || | ||| Sbjct 518482 TCGTTGAAGTAGGCAGGGACAGTGATGAC 518454 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| ||| | || |||| |||| ||||| | ||||| |||||||| || || Sbjct 518235 TTCATGTCGGCCTGAACCTCGGGGTCGTTGAACTTGCGGCCGATCAGACGCTTCGCGTCG 518176 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | |||||||| || |||||||||||||| || ||||| | ||| Sbjct 518175 AAGACGGTGTTGTGAGGGTTCATCGCCACCTGGTTCTTCGCCGCATCTCCGATCAAACGC 518116 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || || || |||| |||| || ||||| | || ||||||||||||||| Sbjct 518115 TC---CGTGTCGGTGAAGCCGACAAACGACGGTGTCGTCCTGTTGCCTTGGTCGTTCGCA 518059 Query 8078 ATAATTTC 8085 || || || Sbjct 518058 ATGATCTC 518051 >seq448 Length=428366 Score = 152 bits (168), Expect = 7e-32 Identities = 343/515 (67%), Gaps = 3/515 (1%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| ||||| ||||| |||||||| || || | | || | || ||| | | || Sbjct 7069 CAGGTCCTCGAAACGAGCACGGGTGATCTGAGTGGTGTAGTCCTCACCATCGAAGAGAGA 7128 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 || || |||||||| || || || || || | || ||||| || ||||| || || Sbjct 7129 GTCGATCTCAATGGTGGTCTGGGCACCGGAGGAAAGGGTACGCTTGGCACGCTCGCAAGC 7188 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 || || | ||| || || ||||| | | || || | || ||||| || || | Sbjct 7189 AGTACGGAGACGGCGGAGAGCACGGGCATCGCCAGAGAGGTCCTTCTTGGTCTTGCGCTG 7248 Query 7423 AAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 ||||| | | |||| |||||| | | ||||| || | |||||||||||| || Sbjct 7249 GAACTCCTTCTTGCAGTGGTCAAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGGGT 7308 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 || || ||||| || ||||| |||| ||| || | ||||| | | |||||||| Sbjct 7309 GTCACCAGCGGTAGCCTTGACGGTGAAGACACCGCCCTGGATGTTGAGGAGGGAAACATC 7368 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT---CGTCTTTGTTCTT 7599 || ||||||||||||| ||| | ||||| ||||| || | | ||| Sbjct 7369 GAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTACCAGACTTGCCGGC 7428 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 | |||||||||| |||||||| || || || || || || || ||||| || ||| || Sbjct 7429 ACCGAGACCGTAGGCGATAGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTAAG 7488 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 ||||| || | | || || || || || || || || ||||| |||||||| || Sbjct 7489 ACCAGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGG 7548 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 ||| || | ||| || | | || ||||| |||| Sbjct 7549 GACGGTGATGACAGCCTTCTCAACCTTCTTGCCGA 7583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128369948720