Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq516 251 9e-62 seq449 132 6e-26 seq384 84.2 3e-11 >seq516 Length=1641395 Score = 251 bits (278), Expect = 9e-62 Identities = 950/1469 (65%), Gaps = 51/1469 (3%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| |||||||||| |||| ||||||| | ||||| || | Sbjct 1417096 TACTTTGGCTTCAAGACCCTTGAGAGGTCATACCTCCTCAAGCTGGACGGGAAGATCGCC 1417037 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 || | || ||| ||||| ||||||| || || |||||||| ||||| | |||| Sbjct 1417036 GAGAGACCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGGGACAACGTTGAG 1416977 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 || | ||||| ||| || |||||| | | |||| |||||| | || || Sbjct 1416976 CGCGTCATCGAGACCTACAACTTGATGTCAAGCAAGTTTTTCACCCACGCCTCTCCCACA 1416917 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || |||||||| ||||| || | ||| |||| ||| |||||| | | | ||| Sbjct 1416916 CTGTTCAACGCCGGTACCCCCCAGGCTCAACTGTCTTCTTGCTTCCTTGTCGACATGAAG 1416857 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 ||||| || ||| | ||||| |||| |||||||| |||||| ||||||||| | Sbjct 1416856 GAGGACTCCATCGAAGGCATCTACGACACTCTCAAGACGTGTGCCATGATCTCAAAGATG 1416797 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-G 111903 ||||| || || || ||| || |||| | | || | | |||||| | | | Sbjct 1416796 GCTGGCGGCATTGGCATGAACGTCCACCGCATTCGCGCTACT--GGCTCGTACATCGCCG 1416739 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || ||||| || | ||| | || || |||||||| || || ||| ||| || | Sbjct 1416738 GCACCAATGGCACCTCCAACGGTGTCATCCCCATGCTTCGAGTTTTCAACAACACCGCTC 1416679 Query 111964 GCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 |||| || |||| | ||| ||| | | || | |||| ||||||| |||| Sbjct 1416678 GCTACGTCGACCAGGGTGGCAACAAGCGCCCC---GGCGCCTTCGCCATCTATCTCGAGC 1416622 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| ||| | | |||||| | || | || ||||| || | ||||||| Sbjct 1416621 CCTGGCACGCCGATGTTTTCGAGTTCTTGGATCTCCGCAAGAACCACGGCAAAGAGGAGG 1416562 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || ||||||||||||| || ||||||||||| ||||||||||||||||| || | Sbjct 1416561 TTCGTGCCCGCGATCTCTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGGGTGG 1416502 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCC 112196 | ||| |||| | ||| | ||| | ||||| || || ||||| || |||| ||| Sbjct 1416501 AAAAGAATGGCGAGTGGACGCTCATGTGTCCCAACGAGTGCCCCGGCCTTGCCGACTGCT 1416442 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC- 112255 | || || |||||||| ||| | || ||||||||| || |||| | || Sbjct 1416441 AT-GGCGAAGAGTTTGAGGCCTTGTATGAGAAGTACGAGCGCGA-----GGGCAAGGGCC 1416388 Query 112256 ----GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 ||| | ||| | | ||| | || |||||| || | || |||||||||| Sbjct 1416387 GCAAGACCCTAAAGGCTCAAAAGCTCTGGTATGCCATTCTCGAGGCACAGACCGAGACTG 1416328 Query 112312 GTACACCATATATGCTTTACAAAG---ACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 112368 ||| || | |||||||| || | ||||| |||| ||||| || || ||||| Sbjct 1416327 GTAACCCGTTCATGCTTTATAAGGATCACGCC---AACCGCAAGAGCAACCAGAAGAACC 1416271 Query 112369 TGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 112428 | ||| ||| | |||||| || || || || ||| | || | | || | Sbjct 1416270 TCGGTACCATCCGCAATTCCAATCTGTGCACTGAGATCATTGAGTACTGCGCGCCTGACG 1416211 Query 112429 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACA 112487 || ||||| || ||| | || || |||| || || | ||| || | || || | Sbjct 1416210 AGGTCGCTGTTTGCAACTTGGCCTCGCTCGCCCTGCCTGCATTTGTCGACTACAACGAGA 1416151 Query 112488 AAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAAC 112547 | ||| || | | || ||||| || || | ||| | ||||| ||| Sbjct 1416150 GTG-CATACGACTTCCAGAAGCTCCATGAGACCACCCAGGTTGTTGTACGCAACCTGAAC 1416092 Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 112607 || | |||||| || ||||| ||| | |||||||| || ||| | ||| Sbjct 1416091 AGGATCATTGATGTCAACCACTACCCTGTTCCGGAGGCTCGTAACAGCAACATGCGTCAC 1416032 Query 112608 CGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGC 112666 || || || || || |||||||||||||| || |||| ||| | || || || | | Sbjct 1416031 CGCCCTATCGGCCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTG-CGTCTGCC 1415973 Query 112667 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGC 112726 || || ||| || || || | ||| || || ||||| || || ||||| Sbjct 1415972 CTTCGAGTCCCCTGAGGCTCGCGATCTTAATAAAAAGATCTTCGAGACCATCTACCACGC 1415913 Query 112727 CGCTCTTGAGGCGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 112783 ||||| | | | |||| || |||| ||| || ||| | || || | | || Sbjct 1415912 TGCTCT---GACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGTACCTACGAGTCTTACGA 1415856 Query 112784 GGGTTCTCC-AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA----GACC 112838 |||||| || | || || | || | ||| || | ||| ||||||| | |||| | || Sbjct 1415855 GGGTTCGCCTATCTCCA-AGGGCGAGCTCCAGTATGACATGTGGGGA-GTGAAGCCGTCC 1415798 Query 112839 AAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 112898 | ||| | ||||||||| | || ||||| | |||| | || | ||| | || ||| Sbjct 1415797 GA-CTT--ATGGGACTGGGACTCGCTGAAGGAGCAGATCACGCAGCACGGTGTACGCAAC 1415741 Query 112899 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 112958 ||||| | | || || ||||| || ||| |||| | || ||| |||| | ||||| Sbjct 1415740 AGTCTGCTTGTTGCCCCCATGCCTACTGCCAGCACCTCGCAGATCCTGGGCTACAATGAG 1415681 Query 112959 TGCTTTGAACCCTACACGACGAACATCTA 112987 ||||| ||||| ||||| | |||||||| Sbjct 1415680 TGCTTCGAACCGTACACCTCCAACATCTA 1415652 >seq449 Length=641369 Score = 132 bits (146), Expect = 6e-26 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGT 102165 ||||||| || |||| ||||| || || |||||| | |||||| | || |||| Sbjct 272329 CAGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACCAGAAGT 272270 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | ||||||| |||| || | || ||||| ||||||||||||||||| | Sbjct 272269 CCA---CCTTTGCCCAGCGTCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCG 272213 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 || ||||| | || | ||||| |||||||| ||||||||||| ||||| |||| Sbjct 272212 GTGCCTTCGCTTCCATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCT 272153 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 | |||||||||||||||||||||||||| |||||| Sbjct 272152 CTAACGAGCTTATCTCTCGTGACGAGGGTCTCCAC 272118 >seq384 Length=763591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| || || || || ||||||| |||||| || || | |||||| | ||||| Sbjct 74233 GGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTGCGAGCCGTCGCGAAGAG 74174 Query 16124 ATCCCGTACAC-GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGA 16180 || || || | | ||| || ||||||||||||||||| ||||| | | | || || Sbjct 74173 GTCTCGCACTCTGGATGGA-CCGACACCAACAAACATCTCAACAAACTCGGAACCGCTGA 74115 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 | || |||||| || || || || ||| | || |||||| || |||||||| Sbjct 74114 CGCT--GAAGAAGGGCACGCCGGACTCGCCAGCAGTAGCCTTGGCGAGCAGCGTCTTACC 74057 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || || || ||| ||||||| |||||| || || |||||||| || Sbjct 74056 GGTTCCCGGAGGACCGGCGAGGATGGCACCGCGGGGGATCTTGGCACC 74009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738070321760