Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq516 212 7e-50
seq384 105 8e-18
seq449 96.9 4e-15
>seq516
Length=1641395
Score = 212 bits (234), Expect = 7e-50
Identities = 1112/1748 (64%), Gaps = 69/1748 (4%)
Strand=Plus/Plus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTT 109563
||||| ||||| |||||||| |||||| || || ||||| | | | | | | ||
Sbjct 1415406 GACTGCGACTGGTCGATGAAGGCACCACGGTCTGCGGCCATCTGAACAACGGTCCGCTGA 1415465
Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623
| ||||||||||| |||||||||| | ||| | || | || |||| | ||||
Sbjct 1415466 GAG---ATTTCCCAGACGGTCTTGTACAGAGCCTTCACCTCGGCCGGGATGTTCGGGATG 1415522
Query 109624 TTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGA 109680
|| |||| ||| ||| || | |||| | | |||||| | | ||||| ||
Sbjct 1415523 TTCTGAACAGA---ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCAGACCACAGG 1415579
Query 109681 CCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGT 109740
|| | || ||||| | | ||| |||||| || || || || || |||
Sbjct 1415580 CCCATCTCGACCAGATCCTTGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCCAGT 1415639
Query 109741 GTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATT 109800
|| || |||||||||| | ||||| |||||||| |||||||||| ||| |||||
Sbjct 1415640 ACACGGCGCTGGTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATC 1415699
Query 109801 TGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTC 109860
|| | ||| || || |||||||| || | || |||||||| || | ||| | | |
Sbjct 1415700 TGCGAGGTGCTGGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGC 1415759
Query 109861 TTTACCCGCTCACGCATTGCGTCCCAATC--ATAAC---GACCACTAAATTTAGTCTCAC 109915
| | | |||| || | |||||| || |||| ||| || | |||
Sbjct 1415760 GTGATCTGCTCCTTCAGCGAGTCCCAGTCCCATAAGTCGGACGGCTTCA------CTC-- 1415811
Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975
||||||| || || || | |||| | ||| ||||||| | || |||||
Sbjct 1415812 ---CCCACATGTCATACTGGAGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTCGT 1415868
Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCTAGTGCCGCATGATACATAGTC 110034
| | ||||| ||| ||||| || || | || || || || || || || |||
Sbjct 1415869 AGGTACCCTCCTCCTTGGCCAGCTGCACCGACATGGTC-AGAGCAGCGTGGTAGATGGTC 1415927
Query 110035 TCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC-CACAAAG 110093
|| || || | ||| | ||||| ||| | |||||||| |||| || |
Sbjct 1415928 TCGAAGATCTTTTTATTAAGATCGCGAGCCTCAGGGGACTCGAAGGGCAGACGCAGAGCC 1415987
Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153
|| ||| |||| || ||||| || ||||| || || || ||||| || ||||||
Sbjct 1415988 AAGAAAG-CATCAGCAAGACCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTTGCT 1416046
Query 110154 GCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213
| ||||| || ||||| |||| || |||| || || || || |||
Sbjct 1416047 GTTACGAGCCTCCGGAACAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTG--CGT 1416104
Query 110214 C--ACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271
||| || ||| | |||||||| || | | | ||| | | || | | | |
Sbjct 1416105 ACAACAACCTGGGTGGTCTCATGGAGCTTCTGGAAGTCGTATGCACTCTCGTTGTAGTCG 1416164
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331
||| || || || || | || || | ||||| |||| |||||| || |
Sbjct 1416165 ACAAATGCAGGCAGGGCGAGCGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAG 1416224
Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391
|| || | || || || |||| |||||| | ||| ||| | ||||||||| ||
Sbjct 1416225 TACTCAATGATCTCAGTGCACAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTGGTTG 1416284
Query 110392 GATTTGGAGTTG-CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450
||| |||| | || ||||||||| |||||| | ||| ||||||| || |||||||
Sbjct 1416285 CTCTTGCGGTTGGCGTG-ATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGC 1416343
Query 110451 CTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGT-TAGCGAGACCTT--C 110507
|| ||||||||| | ||| | || | | | | | || | ||| | |||| |
Sbjct 1416344 CTCGAGAATGGCATACCAGA-----GCTTTTGAGCCTTTAGGGTCTTGCG-GCCCTTGCC 1416397
Query 110508 CTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACC 110564
||| ||||||||| |||||| ||||||| || | || || || | ||| ||
Sbjct 1416398 CTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCGGCAAGGCC 1416457
Query 110565 CTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAA 110624
|| || |||||| | ||| | ||| | ||| || || ||||||||||||||
Sbjct 1416458 GGGGCACTCGTTGGGACACATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAA 1416517
Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684
|| || |||||||| | || ||| || || ||| |||| |||| || | || ||
Sbjct 1416518 GAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTG 1416577
Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744
||| ||| || ||||| || || | | ||| | |||||| || |||||||||| ||
Sbjct 1416578 GTTCTTGCGGAGATCCAAGAACTCGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGC 1416637
Query 110745 GATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798
|| || || ||| | | || |||||| || ||||| || ||| |||||
Sbjct 1416638 GAAGGCGCCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAA 1416694
Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT 110858
|| | ||||| || || | || | ||| ||||| || || || ||
Sbjct 1416695 AACTCGAAGCATGGGGATGACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCC 1416754
Query 110859 ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC 110918
| | || |||||| ||||| | ||| ||||| || || ||| ||| || ||
Sbjct 1416755 AGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGC 1416814
Query 110919 ACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977
|||| ||| |||| || | || || || || || || || |||| || | | || |
Sbjct 1416815 ACACGTCT-TGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGA 1416873
Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037
|||||||||||| |||| | || || || || ||||| ||||| || | || ||
Sbjct 1416874 AGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGG 1416933
Query 111038 TGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC 111095
||| | | |||| |||||| |||||| || |||| || || | | ||
Sbjct 1416934 TGA--AAAACTTGCTTGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCC 1416991
Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155
||||| | ||||| ||||||| ||| | || || | ||| | ||| || ||
Sbjct 1416992 CCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTC 1417051
Query 111156 AACACGCTGA--AGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAA 111213
|| ||| ||||| | |||| |||||||||| ||||||||| ||| |||
Sbjct 1417052 --CAGCTTGAGGAGGTATGACCTCTCAAGGGTCTTGAAGCCAAAGTATTGGTAATTGAAG 1417109
Query 111214 TCACGATC 111221
||||| ||
Sbjct 1417110 TCACGGTC 1417117
>seq384
Length=763591
Score = 105 bits (116), Expect = 8e-18
Identities = 330/504 (65%), Gaps = 23/504 (5%)
Strand=Plus/Minus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
||||||||||| || || | | || | || ||||||||| | | ||| ||| | |||
Sbjct 74412 TCGAAACGACCAGGACGCATCAACGCCTTGTCGAGAATATCGGCTCTGTTGGTACCTGCA 74353
Query 11566 ATGACTACAATGCCAGT--CTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGA 11623
| || || | || || || | | |||||||||||| || || || | |||||| |
Sbjct 74352 AGCACAACCA--CCTGTTCCTGGGTATTGAAACCGTCCATCTCCGTCAGGATCTGGTTCA 74295
Query 11624 TCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCCGAACGCTTCTTA 11676
||| || ||||| ||||| ||| | | |||| | ||| |
Sbjct 74294 GGGTCGCCTCTCGCTCGTCGTTACCACCCATGCGGTTACCCTCCTGTCTCGCGCG----A 74239
Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736
|| | ||||| || || |||||||| | ||| || || ||| || ||| ||
Sbjct 74238 CCAATGGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTGCGAGCCGTCGCG 74179
Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGG 11794
|| || || || || | | || ||||| || ||||||||||| || | | | |
Sbjct 74178 AAGAGGTCTCGCACTCTGGATGGACCGACACCAACAAACATCTCAACAAACTCGGAACCG 74119
Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854
| || | ||||| |||||| || ||||| ||||| | || ||||| || ||||
Sbjct 74118 CTGA-CGCTGAA-GAAGGGCACGCCGGACTCGCCAGCAGTAGCCTTGGCGAGCAGCGTCT 74061
Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCC 11912
|||| || || || | ||| ||||| | ||| || ||||||||||||||||| || ||
Sbjct 74060 TACCGGTTCCCGGAGGACCGGCGAGGATGGCACCGCGGGGGATCTTGGCACCTAACCTC- 74002
Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972
| |||||||||| |||| | |||| || | |||| || ||| ||||||
Sbjct 74001 -TCGAAGCGCTCAGGAGTCTTCAAGAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTC 73943
Query 11973 GTCGATACCCTCAACATCGGTGAA 11996
||| || || | || ||| ||||
Sbjct 73942 GTCCATGCCAGCGACGTCGTTGAA 73919
>seq449
Length=641369
Score = 96.9 bits (106), Expect = 4e-15
Identities = 324/495 (65%), Gaps = 11/495 (2%)
Strand=Plus/Plus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
||||| | || | ||| |||||||| || ||||| || |||| |||||||| |||||
Sbjct 271819 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATG 271878
Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCA-GAAGAC 119325
||||| || || || | || || ||| | || |||| ||| | || | ||||
Sbjct 271879 AAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGG--GCAACAAGCAGAC 271936
Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385
| || | || ||||||| || | |||| | ||| ||||| || | ||| |
Sbjct 271937 GGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGAAGAGCGC 271996
Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445
| || ||||| ||| | ||| | || ||| |||| ||||| || | ||| |
Sbjct 271997 AGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATAATGTCCT 272056
Query 119446 GAAT-AGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCT 119504
||| | | || | | || ||| | | | | |||||| ||| || ||
Sbjct 272057 CAATGACCTGCTTGCTAGGGCG-GTTCTTGAGGTGAGAAAACAAGAGGCAGGCGAAGTCG 272115
Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564
|| || || || || |||||||| ||||| ||| ||| || || ||||||||
Sbjct 272116 GTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGCATGAGA 272175
Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624
|| | ||||| ||||| ||||||| | || || ||||||||| ||||| ||
Sbjct 272176 CCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACCCTCAACG 272235
Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-CTTGTCGAA---CCACTTGAG 119680
|| || || | |||||||| ||||| ||| || || |||| | |||||||||
Sbjct 272236 GCAGCAAAGGCAACTAGACGCTGGGCAAA-GGTGGACTTCTGGTCGGAGATCCACTTGAG 272294
Query 119681 AGCCCAGTTGGCCTT 119695
|||||||| ||||||
Sbjct 272295 AGCCCAGTCGGCCTT 272309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588971891892400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |