Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq516 212 7e-50 seq384 105 8e-18 seq449 96.9 4e-15 >seq516 Length=1641395 Score = 212 bits (234), Expect = 7e-50 Identities = 1112/1748 (64%), Gaps = 69/1748 (4%) Strand=Plus/Plus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTT 109563 ||||| ||||| |||||||| |||||| || || ||||| | | | | | | || Sbjct 1415406 GACTGCGACTGGTCGATGAAGGCACCACGGTCTGCGGCCATCTGAACAACGGTCCGCTGA 1415465 Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623 | ||||||||||| |||||||||| | ||| | || | || |||| | |||| Sbjct 1415466 GAG---ATTTCCCAGACGGTCTTGTACAGAGCCTTCACCTCGGCCGGGATGTTCGGGATG 1415522 Query 109624 TTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGA 109680 || |||| ||| ||| || | |||| | | |||||| | | ||||| || Sbjct 1415523 TTCTGAACAGA---ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCAGACCACAGG 1415579 Query 109681 CCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGT 109740 || | || ||||| | | ||| |||||| || || || || || ||| Sbjct 1415580 CCCATCTCGACCAGATCCTTGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCCAGT 1415639 Query 109741 GTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATT 109800 || || |||||||||| | ||||| |||||||| |||||||||| ||| ||||| Sbjct 1415640 ACACGGCGCTGGTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATC 1415699 Query 109801 TGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTC 109860 || | ||| || || |||||||| || | || |||||||| || | ||| | | | Sbjct 1415700 TGCGAGGTGCTGGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGC 1415759 Query 109861 TTTACCCGCTCACGCATTGCGTCCCAATC--ATAAC---GACCACTAAATTTAGTCTCAC 109915 | | | |||| || | |||||| || |||| ||| || | ||| Sbjct 1415760 GTGATCTGCTCCTTCAGCGAGTCCCAGTCCCATAAGTCGGACGGCTTCA------CTC-- 1415811 Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975 ||||||| || || || | |||| | ||| ||||||| | || ||||| Sbjct 1415812 ---CCCACATGTCATACTGGAGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTCGT 1415868 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCTAGTGCCGCATGATACATAGTC 110034 | | ||||| ||| ||||| || || | || || || || || || || ||| Sbjct 1415869 AGGTACCCTCCTCCTTGGCCAGCTGCACCGACATGGTC-AGAGCAGCGTGGTAGATGGTC 1415927 Query 110035 TCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC-CACAAAG 110093 || || || | ||| | ||||| ||| | |||||||| |||| || | Sbjct 1415928 TCGAAGATCTTTTTATTAAGATCGCGAGCCTCAGGGGACTCGAAGGGCAGACGCAGAGCC 1415987 Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153 || ||| |||| || ||||| || ||||| || || || ||||| || |||||| Sbjct 1415988 AAGAAAG-CATCAGCAAGACCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTTGCT 1416046 Query 110154 GCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213 | ||||| || ||||| |||| || |||| || || || || ||| Sbjct 1416047 GTTACGAGCCTCCGGAACAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTG--CGT 1416104 Query 110214 C--ACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 ||| || ||| | |||||||| || | | | ||| | | || | | | | Sbjct 1416105 ACAACAACCTGGGTGGTCTCATGGAGCTTCTGGAAGTCGTATGCACTCTCGTTGTAGTCG 1416164 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 ||| || || || || | || || | ||||| |||| |||||| || | Sbjct 1416165 ACAAATGCAGGCAGGGCGAGCGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAG 1416224 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 || || | || || || |||| |||||| | ||| ||| | ||||||||| || Sbjct 1416225 TACTCAATGATCTCAGTGCACAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTGGTTG 1416284 Query 110392 GATTTGGAGTTG-CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 ||| |||| | || ||||||||| |||||| | ||| ||||||| || ||||||| Sbjct 1416285 CTCTTGCGGTTGGCGTG-ATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGC 1416343 Query 110451 CTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGT-TAGCGAGACCTT--C 110507 || ||||||||| | ||| | || | | | | | || | ||| | |||| | Sbjct 1416344 CTCGAGAATGGCATACCAGA-----GCTTTTGAGCCTTTAGGGTCTTGCG-GCCCTTGCC 1416397 Query 110508 CTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACC 110564 ||| ||||||||| |||||| ||||||| || | || || || | ||| || Sbjct 1416398 CTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCGGCAAGGCC 1416457 Query 110565 CTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAA 110624 || || |||||| | ||| | ||| | ||| || || |||||||||||||| Sbjct 1416458 GGGGCACTCGTTGGGACACATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAA 1416517 Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684 || || |||||||| | || ||| || || ||| |||| |||| || | || || Sbjct 1416518 GAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTG 1416577 Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744 ||| ||| || ||||| || || | | ||| | |||||| || |||||||||| || Sbjct 1416578 GTTCTTGCGGAGATCCAAGAACTCGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGC 1416637 Query 110745 GATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798 || || || ||| | | || |||||| || ||||| || ||| ||||| Sbjct 1416638 GAAGGCGCCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAA 1416694 Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT 110858 || | ||||| || || | || | ||| ||||| || || || || Sbjct 1416695 AACTCGAAGCATGGGGATGACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCC 1416754 Query 110859 ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC 110918 | | || |||||| ||||| | ||| ||||| || || ||| ||| || || Sbjct 1416755 AGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGC 1416814 Query 110919 ACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977 |||| ||| |||| || | || || || || || || || |||| || | | || | Sbjct 1416815 ACACGTCT-TGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGA 1416873 Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037 |||||||||||| |||| | || || || || ||||| ||||| || | || || Sbjct 1416874 AGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGG 1416933 Query 111038 TGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC 111095 ||| | | |||| |||||| |||||| || |||| || || | | || Sbjct 1416934 TGA--AAAACTTGCTTGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCC 1416991 Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155 ||||| | ||||| ||||||| ||| | || || | ||| | ||| || || Sbjct 1416992 CCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTC 1417051 Query 111156 AACACGCTGA--AGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAA 111213 || ||| ||||| | |||| |||||||||| ||||||||| ||| ||| Sbjct 1417052 --CAGCTTGAGGAGGTATGACCTCTCAAGGGTCTTGAAGCCAAAGTATTGGTAATTGAAG 1417109 Query 111214 TCACGATC 111221 ||||| || Sbjct 1417110 TCACGGTC 1417117 >seq384 Length=763591 Score = 105 bits (116), Expect = 8e-18 Identities = 330/504 (65%), Gaps = 23/504 (5%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||||||||| || || | | || | || ||||||||| | | ||| ||| | ||| Sbjct 74412 TCGAAACGACCAGGACGCATCAACGCCTTGTCGAGAATATCGGCTCTGTTGGTACCTGCA 74353 Query 11566 ATGACTACAATGCCAGT--CTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGA 11623 | || || | || || || | | |||||||||||| || || || | |||||| | Sbjct 74352 AGCACAACCA--CCTGTTCCTGGGTATTGAAACCGTCCATCTCCGTCAGGATCTGGTTCA 74295 Query 11624 TCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCCGAACGCTTCTTA 11676 ||| || ||||| ||||| ||| | | |||| | ||| | Sbjct 74294 GGGTCGCCTCTCGCTCGTCGTTACCACCCATGCGGTTACCCTCCTGTCTCGCGCG----A 74239 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || | ||||| || || |||||||| | ||| || || ||| || ||| || Sbjct 74238 CCAATGGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTGCGAGCCGTCGCG 74179 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGG 11794 || || || || || | | || ||||| || ||||||||||| || | | | | Sbjct 74178 AAGAGGTCTCGCACTCTGGATGGACCGACACCAACAAACATCTCAACAAACTCGGAACCG 74119 Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 | || | ||||| |||||| || ||||| ||||| | || ||||| || |||| Sbjct 74118 CTGA-CGCTGAA-GAAGGGCACGCCGGACTCGCCAGCAGTAGCCTTGGCGAGCAGCGTCT 74061 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCC 11912 |||| || || || | ||| ||||| | ||| || ||||||||||||||||| || || Sbjct 74060 TACCGGTTCCCGGAGGACCGGCGAGGATGGCACCGCGGGGGATCTTGGCACCTAACCTC- 74002 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972 | |||||||||| |||| | |||| || | |||| || ||| |||||| Sbjct 74001 -TCGAAGCGCTCAGGAGTCTTCAAGAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTC 73943 Query 11973 GTCGATACCCTCAACATCGGTGAA 11996 ||| || || | || ||| |||| Sbjct 73942 GTCCATGCCAGCGACGTCGTTGAA 73919 >seq449 Length=641369 Score = 96.9 bits (106), Expect = 4e-15 Identities = 324/495 (65%), Gaps = 11/495 (2%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 ||||| | || | ||| |||||||| || ||||| || |||| |||||||| ||||| Sbjct 271819 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATG 271878 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCA-GAAGAC 119325 ||||| || || || | || || ||| | || |||| ||| | || | |||| Sbjct 271879 AAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGG--GCAACAAGCAGAC 271936 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 | || | || ||||||| || | |||| | ||| ||||| || | ||| | Sbjct 271937 GGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGAAGAGCGC 271996 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | || ||||| ||| | ||| | || ||| |||| ||||| || | ||| | Sbjct 271997 AGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATAATGTCCT 272056 Query 119446 GAAT-AGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCT 119504 ||| | | || | | || ||| | | | | |||||| ||| || || Sbjct 272057 CAATGACCTGCTTGCTAGGGCG-GTTCTTGAGGTGAGAAAACAAGAGGCAGGCGAAGTCG 272115 Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564 || || || || || |||||||| ||||| ||| ||| || || |||||||| Sbjct 272116 GTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGCATGAGA 272175 Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 || | ||||| ||||| ||||||| | || || ||||||||| ||||| || Sbjct 272176 CCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACCCTCAACG 272235 Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-CTTGTCGAA---CCACTTGAG 119680 || || || | |||||||| ||||| ||| || || |||| | ||||||||| Sbjct 272236 GCAGCAAAGGCAACTAGACGCTGGGCAAA-GGTGGACTTCTGGTCGGAGATCCACTTGAG 272294 Query 119681 AGCCCAGTTGGCCTT 119695 |||||||| |||||| Sbjct 272295 AGCCCAGTCGGCCTT 272309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971891892400